RetrogeneDB ID: | retro_cpor_1325 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:55710506..55710801(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSCPOG00000026030 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.79 % |
Parental protein coverage: | 85.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTG-VHHYSGNNIELGTACG |
LQL.M.SGKYVLGY.QTLKMIRQ...KL.I.A.N.PALRKSE.E.YAML.KTG.VHH.S.NNIELGTA.G | |
Retrocopy | LQLLMESGKYVLGYQQTLKMIRQDNMKLAIQAKNFPALRKSETECYAMLGKTG>VHHCSSNNIELGTAHG |
Parental | KYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
KYYRV.TLA.IDPGDSD.IRSMPEQT.EK | |
Retrocopy | KYYRVRTLAMIDPGDSDAIRSMPEQTNEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 85 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 133 .90 RPM |
SRP017611_liver | 0 .00 RPM | 98 .07 RPM |
SRP040447_lung | 0 .00 RPM | 148 .02 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 137 .83 RPM |