RetrogeneDB ID: | retro_dord_361 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_138085:1187..1521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl30 | ||
Ensembl ID: | ENSDORG00000012383 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037] |
Percent Identity: | 79.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKGKLVILANNCPALRKSEIEYYAML-AKT |
MV..KK.KKSLESINSRLQLV.KSG.Y.LG.KQTLKMIRQGK...VILANN.PA.R.SEIEYYA.L.AKT | |
Retrocopy | MVVTKKKKKSLESINSRLQLVTKSGEYMLGFKQTLKMIRQGK---VILANNFPAMRESEIEYYATL<AKT |
Parental | GVHHYSGNNIELGTACGKYYRVCTLAIIDP-GDSDIIRSMPEQTGEK |
GV.HYSGNNIELGTACGKYYRV..LAIID...DSDIIR..PEQ.GEK | |
Retrocopy | GVYHYSGNNIELGTACGKYYRVWILAIIDS<SDSDIIRNLPEQIGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |