Parental gene:

ENSEEUG00000010307

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_4972:45026..47640(-)


>ENSEEUG00000010307
ATGGAGGGCGTAGAGAAGAAGAAGAAGATGGTTCCTGGTGTGCCAGAAACCCTGAAGAAAAAGCGAAGGAGTTTCGCCGA
GTTGAAAATCAAGCGTATGAGAAAGAAGTTTGCCCAGAAGATGCTTCGCAAGGCAAGGAGGAAGCTTATCTACGAAAAAG
CCAAGTACTACCACAAGGAATACAGTCAGATGTACAGGACCGAGATTCGCATGGCTCGGATGGCAAGGAAAGCCGGCAAC
TTCTACGTCCCCGCAGAGCCCAAGCTGGCCTTCGTTATCAGGATCAGAGGTATCAATGGTGTGAGCCCAAAGGTCCGGAA
GGTGTTGCAGCTTCTTCGCCTTCGACAGATCTTTAATGGCACCTTTGTTAAGCTCAATAAGGCTTCAATTAACATGTTGA
GAATTGTGGAGCCCTATATTGCTTGGGGGTACCCAAATCTGAAGTCAGTAAACGAACTGATCTACAAGCGAGGTTATGGC
AAAATCCACAAGAAACGGATTGCTCTGACAGATAACTCCTTGATTGCTCGATCCCTTGGTAAATATGGCATCATCTGCAT
GGAGGATCTGATCCATGAGATCTACACTGTTGGAAAACGCTTTAAAGAGGCAAACAACTTCCTCTGGCCATTCAAATTAT
CCTCTCCACGGGGTGGTATGAAGAAAAAGACCACACACTTCGTAGAAGGTGGAGATGCTGGTAACAGGGAAGACCAGATC
AACAGGCTTATTAGAAGAATGAACTAA

Library Parental gene expression (RPM)
SRP017611_brain 294 .73 RPM
SRP017611_kidney 720 .71 RPM
SRP017611_liver 434 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000004140 ortholog_one2many 18 retrogenes
retro_cpor_1056, retro_cpor_1190, retro_cpor_1342, retro_cpor_1347, retro_cpor_1348, retro_cpor_1366, retro_cpor_1418, retro_cpor_1449, retro_cpor_1452, retro_cpor_1453, retro_cpor_187, retro_cpor_209, retro_cpor_245, retro_cpor_266, retro_cpor_397, retro_cpor_458, retro_cpor_506, retro_cpor_640,
Erinaceus europaeus ENSEEUG00000010431 within_species_paralog 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000005656 ortholog_one2many 33 retrogenes
retro_etel_1099, retro_etel_1120, retro_etel_1154, retro_etel_1158, retro_etel_1333, retro_etel_1370, retro_etel_1553, retro_etel_1642, retro_etel_1708, retro_etel_1720, retro_etel_175, retro_etel_185, retro_etel_1891, retro_etel_2042, retro_etel_2044, retro_etel_2118, retro_etel_2149, retro_etel_265, retro_etel_316, retro_etel_375, retro_etel_402, retro_etel_519, retro_etel_532, retro_etel_554, retro_etel_610, retro_etel_793, retro_etel_865, retro_etel_869, retro_etel_877, retro_etel_887, retro_etel_889, retro_etel_992, retro_etel_993,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mustela putorius furo ENSMPUG00000010240 ortholog_one2many 15 retrogenes
retro_mputfur_1004, retro_mputfur_1031, retro_mputfur_1034, retro_mputfur_1035, retro_mputfur_1156, retro_mputfur_1168, retro_mputfur_1384, retro_mputfur_1454, retro_mputfur_1481, retro_mputfur_390, retro_mputfur_410, retro_mputfur_545, retro_mputfur_839, retro_mputfur_929, retro_mputfur_982,
Nomascus leucogenys ENSNLEG00000026615 ortholog_one2many 8 retrogenes
retro_nleu_1012, retro_nleu_1459, retro_nleu_1696, retro_nleu_1853, retro_nleu_2479, retro_nleu_2603, retro_nleu_3, retro_nleu_901,
Sorex araneus ENSSARG00000001088 ortholog_one2many 3 retrogenes
retro_sara_268, retro_sara_310, retro_sara_623,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_55 73.76 56.85
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2. retro_eeur_354 80.10 76.61
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3. retro_eeur_420 78.57 56.05
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Download FASTA sequences of all ENSEEUG00000010307 retrocopies