Parental gene:

RPL7, ENSCPOG00000004140

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:39740022..39741647(+)


>ENSCPOG00000004140
CTTCGAAAGGCAAGGAGGAAGCTCATCTATGAAAAAGCCAGGCACTATCATAAAGAGTACAGACAGATGTACAGAACTGA
GATTCGAATGGCTAGGATGGCAAGGAAAGCTGGCAACTTCTATGTACCTGCAGAGCCGAAATTGGCATTTGTCATCCGGA
TCAGGGGTATCAATGGTGTGAGCCCAAAGGTCCGTAAGGTGTTGCAGCTTCTTCGTCTTCGCCAGATCTTCAATGGCACC
TTTGTTAAGCTCAACAAGGCTTCAGTTAACATGCTGAGAATTGTGGAACCATATATTGCATGGGGGTACCCTAACCTGAA
GTCAGTAAATGAACTAATATACAAGCGTGGTTATGGCAAAATCAATAAGAAGCGAATTGCCTTGACAGATAACTCATTGA
TTGCTCGATCTCTTGGTAAATATGGCATCATCTGCATGGAGGATCTAATTCATGAGATCTATACTGTTGGAAAACGCTTT
AAAGAGGCAAATAACTTCCTGTGGCCTTTCAAATTGTCCTCTCCACGAGGTGGAATGAAGAAAAAGACCACCCATTTTGT
GGAAGGTGGAGATGCCGGAAACAGGGAAGACCAGATCAACAGGCTTATTAGAAGGATGAATTAA

Library Parental gene expression (RPM)
SRP017611_brain 185 .03 RPM
SRP017611_kidney 270 .09 RPM
SRP017611_liver 197 .22 RPM
SRP040447_lung 309 .49 RPM
SRP040447_skeletal_muscle 315 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000021189 within_species_paralog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Erinaceus europaeus ENSEEUG00000010307 ortholog_one2many 3 retrogenes
retro_eeur_354, retro_eeur_420, retro_eeur_55,
Echinops telfairi ENSETEG00000005656 ortholog_one2one 33 retrogenes
retro_etel_1099, retro_etel_1120, retro_etel_1154, retro_etel_1158, retro_etel_1333, retro_etel_1370, retro_etel_1553, retro_etel_1642, retro_etel_1708, retro_etel_1720, retro_etel_175, retro_etel_185, retro_etel_1891, retro_etel_2042, retro_etel_2044, retro_etel_2118, retro_etel_2149, retro_etel_265, retro_etel_316, retro_etel_375, retro_etel_402, retro_etel_519, retro_etel_532, retro_etel_554, retro_etel_610, retro_etel_793, retro_etel_865, retro_etel_869, retro_etel_877, retro_etel_887, retro_etel_889, retro_etel_992, retro_etel_993,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2one 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_one2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_one2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mustela putorius furo ENSMPUG00000010240 ortholog_one2one 15 retrogenes
retro_mputfur_1004, retro_mputfur_1031, retro_mputfur_1034, retro_mputfur_1035, retro_mputfur_1156, retro_mputfur_1168, retro_mputfur_1384, retro_mputfur_1454, retro_mputfur_1481, retro_mputfur_390, retro_mputfur_410, retro_mputfur_545, retro_mputfur_839, retro_mputfur_929, retro_mputfur_982,
Nomascus leucogenys ENSNLEG00000026615 ortholog_one2one 8 retrogenes
retro_nleu_1012, retro_nleu_1459, retro_nleu_1696, retro_nleu_1853, retro_nleu_2479, retro_nleu_2603, retro_nleu_3, retro_nleu_901,
Sorex araneus ENSSARG00000001088 ortholog_one2one 3 retrogenes
retro_sara_268, retro_sara_310, retro_sara_623,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_187 69.35 59.90
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2. retro_cpor_209 56.96 75.36
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3. retro_cpor_245 65.27 77.78
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4. retro_cpor_266 63.64 57.49
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5. retro_cpor_397 76.35 97.58
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6. retro_cpor_458 68.75 83.57
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7. retro_cpor_506 67.07 78.26
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8. retro_cpor_640 64.75 66.18
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9. retro_cpor_1056 70.44 96.62
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10. retro_cpor_1190 66.83 95.65
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11. retro_cpor_1342 53.14 83.09
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12. retro_cpor_1347 54.61 66.18
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13. retro_cpor_1348 57.80 82.13
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14. retro_cpor_1366 71.98 86.47
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15. retro_cpor_1418 77.51 100.00
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16. retro_cpor_1449 54.68 65.70
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17. retro_cpor_1452 57.58 77.78
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18. retro_cpor_1453 50.62 76.81
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Download FASTA sequences of all ENSCPOG00000004140 retrocopies