Parental gene:

PPP2CA, ENSG00000113575

Aliases:None
Description:protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299]
Organism:Human (Homo sapiens)
Coordinates:5:133530024..133561833(-)


>ENSG00000113575
ATGGACGAGAAGGTGTTCACCAAGGAGCTGGACCAGTGGATCGAGCAGCTGAACGAGTGCAAGCAGCTGTCCGAGTCCCA
GGTCAAGAGCCTCTGCGAGAAGGCTAAAGAAATCCTGACAAAAGAATCCAACGTGCAAGAGGTTCGATGTCCAGTTACTG
TCTGTGGAGATGTGCATGGGCAATTTCATGATCTCATGGAACTGTTTAGAATTGGTGGCAAATCACCAGATACAAATTAC
TTGTTTATGGGAGATTATGTTGACAGAGGATATTATTCAGTTGAAACAGTTACACTGCTTGTAGCTCTTAAGGTTCGTTA
CCGTGAACGCATCACCATTCTTCGAGGGAATCATGAGAGCAGACAGATCACACAAGTTTATGGTTTCTATGATGAATGTT
TAAGAAAATATGGAAATGCAAATGTTTGGAAATATTTTACAGATCTTTTTGACTATCTTCCTCTCACTGCCTTGGTGGAT
GGGCAGATCTTCTGTCTACATGGTGGTCTCTCGCCATCTATAGATACACTGGATCATATCAGAGCACTTGATCGCCTACA
AGAAGTTCCCCATGAGGGTCCAATGTGTGACTTGCTGTGGTCAGATCCAGATGACCGTGGTGGTTGGGGTATATCTCCTC
GAGGAGCTGGTTACACCTTTGGGCAAGATATTTCTGAGACATTTAATCATGCCAATGGCCTCACGTTGGTGTCTAGAGCT
CACCAGCTAGTGATGGAGGGATATAACTGGTGCCATGACCGGAATGTAGTAACGATTTTCAGTGCTCCAAACTATTGTTA
TCGTTGTGGTAACCAAGCTGCAATCATGGAACTTGACGATACTCTAAAATACTCTTTCTTGCAGTTTGACCCAGCACCTC
GTAGAGGCGAGCCACATGTTACTCGTCGTACCCCAGACTACTTCCTGTAA

Library Parental gene expression (RPM)
bodymap2_adipose 103 .03 RPM
bodymap2_adrenal 120 .77 RPM
bodymap2_brain 266 .94 RPM
bodymap2_breast 95 .00 RPM
bodymap2_colon 126 .11 RPM
bodymap2_heart 122 .40 RPM
bodymap2_kidney 153 .41 RPM
bodymap2_liver 71 .93 RPM
bodymap2_lung 169 .87 RPM
bodymap2_lymph_node 119 .60 RPM
bodymap2_ovary 144 .90 RPM
bodymap2_prostate 133 .45 RPM
bodymap2_skeletal_muscle 89 .16 RPM
bodymap2_testis 153 .62 RPM
bodymap2_thyroid 168 .80 RPM
bodymap2_white_blood_cells 189 .36 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002653 ortholog_one2one 1 retrogene
retro_acar_69,
Callithrix jacchus ENSCJAG00000013634 ortholog_one2one 2 retrogenes
retro_cjac_1346, retro_cjac_4113,
Homo sapiens ENSG00000104695 within_species_paralog 1 retrogene
retro_hsap_1631,
Nomascus leucogenys ENSNLEG00000026729 ortholog_one2one 1 retrogene
retro_nleu_2441,
Otolemur garnettii ENSOGAG00000009695 ortholog_one2one 2 retrogenes
retro_ogar_3414, retro_ogar_921,
Rattus norvegicus ENSRNOG00000005389 ortholog_one2one 5 retrogenes
retro_rnor_1263, retro_rnor_1264, retro_rnor_1265, retro_rnor_1266, retro_rnor_817,
Sarcophilus harrisii ENSSHAG00000016632 ortholog_one2one 3 retrogenes
retro_shar_313, retro_shar_428, retro_shar_471,
Ictidomys tridecemlineatus ENSSTOG00000010560 ortholog_one2one 1 retrogene
retro_itri_258,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_369 77.99 51.13
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Download FASTA sequences of all ENSG00000113575 retrocopies