Parental gene:

TVP23C, ENSG00000175106

Aliases:TVP23C, FAM18B2
Description:trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) [Source:HGNC Symbol;Acc:30453]
Organism:Human (Homo sapiens)
Coordinates:17:15341204..15466909(-)


>ENSG00000175106
ATGTTGCAGCAGGATAGTAATGATGACACTGAAGATGTTTCACTGTTTGATGCGGAAGAGGAGACGACTAATAGACCAAG
AAAAGCCAAAATCAGACATCCAGTAGCATCGTTTTTCCACTTATTCTTTCGAGTCAGTGCAATCATCGTCTGTCTTCTCT
GTGAGTTGCTCAGCAGCAGCTTTATTACCTGTATGGTTACAATTATCTTGTTGTTGTCGTGTGACTTTTGGGCAGTGAAG
AATGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGA
ATCTAGAAAGGAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCT
GTTCAGTACTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTCACAGTAAAGTGGCTGAGACGGTCTCGCCACATT
GCCCAGACTGGTCTGAAAGTCTTGGGCTCAAGAGATCCTCCCGCTTCCGCCTTCCAAAGCGCTGGGATAACAGGCGTGAG
CCGCTGCCCGGGCCATCCCTCGAGGAAGTTTCATCAGGTAGACATTAATTCTTTCACGAGGATCACGGATCGAGCTCTTT
ACTGGAAACCTGCGCCCCGCCTTAGTTCTCCACCTCTTCGTGCGGCTCCAGGCAACTGCCAACAGATGGCGCCCGCCCGC
CTATTTCTCTCCTTGCGGCTTTGGGCCTGGAGGGGAGGTGGGGAGAGTCCCAATAGCAGAGGAACTGGTGAGCCCGGGCC
AAAATTTCATCTGGCATCCGGAATGCATTAA

Library Parental gene expression (RPM)
bodymap2_adipose 2 .82 RPM
bodymap2_adrenal 5 .06 RPM
bodymap2_brain 3 .38 RPM
bodymap2_breast 3 .64 RPM
bodymap2_colon 2 .18 RPM
bodymap2_heart 0 .76 RPM
bodymap2_kidney 1 .88 RPM
bodymap2_liver 0 .59 RPM
bodymap2_lung 1 .86 RPM
bodymap2_lymph_node 1 .37 RPM
bodymap2_ovary 3 .80 RPM
bodymap2_prostate 1 .73 RPM
bodymap2_skeletal_muscle 0 .22 RPM
bodymap2_testis 4 .90 RPM
bodymap2_thyroid 5 .39 RPM
bodymap2_white_blood_cells 0 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000005330 ortholog_one2many 1 retrogene
retro_cpor_184,
Dasypus novemcinctus ENSDNOG00000007609 ortholog_one2many 2 retrogenes
retro_dnov_1041, retro_dnov_1390,
Homo sapiens ENSG00000171928 within_species_paralog 1 retrogene
retro_hsap_2278,
Loxodonta africana ENSLAFG00000003854 ortholog_one2many 1 retrogene
retro_lafr_465,
Microcebus murinus ENSMICG00000015098 possible_ortholog 4 retrogenes
retro_mmur_1331, retro_mmur_151, retro_mmur_161, retro_mmur_683,
Myotis lucifugus ENSMLUG00000002825 ortholog_one2many 1 retrogene
retro_mluc_1484,
Oryctolagus cuniculus ENSOCUG00000000498 ortholog_one2many 1 retrogene
retro_ocun_759,
Otolemur garnettii ENSOGAG00000012225 ortholog_one2many 1 retrogene
retro_ogar_978,
Pan troglodytes ENSPTRG00000007790 possible_ortholog 1 retrogene
retro_ptro_20,
Pan troglodytes ENSPTRG00000008796 possible_ortholog 1 retrogene
retro_ptro_996,
Rattus norvegicus ENSRNOG00000050649 ortholog_one2many 1 retrogene
retro_rnor_636,
Ictidomys tridecemlineatus ENSSTOG00000000642 ortholog_one2many 6 retrogenes
retro_itri_1415, retro_itri_1841, retro_itri_310, retro_itri_473, retro_itri_711, retro_itri_782,
Tarsius syrichta ENSTSYG00000008082 ortholog_one2many 2 retrogenes
retro_tsyr_2000, retro_tsyr_530,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1625 92.11 74.88
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Download FASTA sequences of all ENSG00000175106 retrocopies