Parental gene:

TDGF1, ENSG00000241186

Aliases:TDGF1, CR, CRGF, CRIPTO
Description:teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:11701]
Organism:Human (Homo sapiens)
Coordinates:3:46616044..46668033(+)


>ENSG00000241186
ATGGACTGCAGGAAGATGGCCCGCTTCTCTTACAGTGTGATTTGGATCATGGCCATTTCTAAAGTCTTTGAACTGGGATT
AGTTGCCGGGCTGGGCCATCAGGAATTTGCTCGTCCATCTCGGGGATACCTGGCCTTCAGAGATGACAGCATTTGGCCCC
AGGAGGAGCCTGCAATTCGGCCTCGGTCTTCCCAGCGTGTGCCGCCCATGGGGATACAGCACAGTAAGGAGCTAAACAGA
ACCTGCTGCCTGAATGGGGGAACCTGCATGCTGGGGTCCTTTTGTGCCTGCCCTCCCTCCTTCTACGGACGGAACTGTGA
GCACGATGTGCGCAAAGAGAACTGTGGGTCTGTGCCCCATGACACCTGGCTGCCCAAGAAGTGTTCCCTGTGTAAATGCT
GGCACGGTCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCCGGCTGTGATGGCCTTGTGATGGATGAGCACCTCGTGGCT
TCCAGGACTCCAGAACTACCACCGTCTGCACGTACTACCACTTTTATGCTAGTTGGCATCTGCCTTTCTATACAAAGCTA
CTATTAA

Library Parental gene expression (RPM)
bodymap2_adipose 0 .46 RPM
bodymap2_adrenal 0 .18 RPM
bodymap2_brain 0 .21 RPM
bodymap2_breast 0 .39 RPM
bodymap2_colon 1 .86 RPM
bodymap2_heart 0 .96 RPM
bodymap2_kidney 19 .73 RPM
bodymap2_liver 1 .22 RPM
bodymap2_lung 0 .00 RPM
bodymap2_lymph_node 1 .50 RPM
bodymap2_ovary 10 .16 RPM
bodymap2_prostate 0 .24 RPM
bodymap2_skeletal_muscle 1 .29 RPM
bodymap2_testis 3 .64 RPM
bodymap2_thyroid 1 .71 RPM
bodymap2_white_blood_cells 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002174 ortholog_one2one 3 retrogenes
retro_cjac_1594, retro_cjac_4151, retro_cjac_938,
Felis catus ENSFCAG00000014508 ortholog_one2one 1 retrogene
retro_fcat_714,
Gorilla gorilla ENSGGOG00000003453 ortholog_one2one 5 retrogenes
retro_ggor_1447, retro_ggor_1815, retro_ggor_2307, retro_ggor_2943, retro_ggor_2990,
Loxodonta africana ENSLAFG00000009140 ortholog_one2one 4 retrogenes
retro_lafr_1037, retro_lafr_1067, retro_lafr_757, retro_lafr_871,
Microcebus murinus ENSMICG00000016492 ortholog_one2one 1 retrogene
retro_mmur_635,
Macaca mulatta ENSMMUG00000003088 ortholog_one2one 6 retrogenes
retro_mmul_1744, retro_mmul_2290, retro_mmul_2560, retro_mmul_742, retro_mmul_770, retro_mmul_967,
Mustela putorius furo ENSMPUG00000015167 ortholog_one2one 1 retrogene
retro_mputfur_961,
Mus musculus ENSMUSG00000032494 ortholog_one2one 3 retrogenes
retro_mmus_1429, retro_mmus_1544, retro_mmus_1908,
Nomascus leucogenys ENSNLEG00000006143 ortholog_one2one 6 retrogenes
retro_nleu_1649, retro_nleu_2124, retro_nleu_2179, retro_nleu_2317, retro_nleu_2519, retro_nleu_535,
Otolemur garnettii ENSOGAG00000017039 ortholog_one2one 1 retrogene
retro_ogar_2611,
Pan troglodytes ENSPTRG00000014854 ortholog_one2one 7 retrogenes
retro_ptro_1333, retro_ptro_1749, retro_ptro_1831, retro_ptro_2319, retro_ptro_2685, retro_ptro_3153, retro_ptro_3194,
Tarsius syrichta ENSTSYG00000013609 ortholog_one2one 2 retrogenes
retro_tsyr_295, retro_tsyr_574,
Tursiops truncatus ENSTTRG00000017299 ortholog_one2one 1 retrogene
retro_ttru_441,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1999 81.76 77.13
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2. retro_hsap_2393 86.16 91.86
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3. retro_hsap_2709 72.34 80.23
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4. retro_hsap_3415 70.67 78.19
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5. retro_hsap_3956 88.18 58.51
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6. retro_hsap_4737 96.81 100.00
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7. retro_hsap_4804 70.63 66.49
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Download FASTA sequences of all ENSG00000241186 retrocopies