Parental gene: | TDGF1, ENSMMUG00000003088 |
| Aliases: | None |
| Description: | teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:11701] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 2:89946394..89949611(-) |
>ENSMMUG00000003088
GACTGCAGGAAGATGGCCCGCTTCTCTTACAGTGTGATTTGGATCATGGCCATTTCTAAAGCCTTTGAACTGGGATTAGT
TGCCGGGCTCAGCCATCGGGAATTTGCACGTCCATCTCGGGGAGACCTGGCCTTCAGAGATGACAGCATTCGGCCCCAGG
AGGAGCCTGCGATTCGGCCTCGGTCTTCCCAGCATGTGTCGCCCATGGGGATACAGAACAGTAAGGAGCTAAACAGAACC
TGCTGCCTGAATGGGGGAACCTGCATGCTGGGGTCCTTTTGTGCCTGCCCCCCCTCCTTCTACGGACGAAACTGTGAGCA
TGATGTGCGCAAAGAGAACTGTGGGTCTGTGCCCCATGACACCTGGCTGCCCAAGAAGTGTTCCCTGTGTAAATGCTGGC
ACGGCCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCTGGCTGTGATGGCCTTGTGATGGATGAGCACCTCGTGGCTTCC
AGGACTCCAGAACTACCACCGTCTGCACGTACTGCTTTTATGCTAGCTGGCATCTGCCTTTCTATACAAAGTTACTATTA
A
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .11 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .08 RPM |
| SRP007412_cerebellum | 0 .13 RPM |
| SRP007412_heart | 0 .06 RPM |
| SRP007412_kidney | 1 .29 RPM |
| SRP007412_liver | 0 .04 RPM |
| SRP007412_testis | 0 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000002174 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000014508 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000241186 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003453 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009140 | ortholog_one2one | 4 retrogenes | |
| Microcebus murinus | ENSMICG00000016492 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000015167 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000032494 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006143 | ortholog_one2one | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000017039 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014854 | ortholog_one2one | 7 retrogenes | |
| Tarsius syrichta | ENSTSYG00000013609 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000017299 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_742 | 80.85 | 100.00 | Please wait, loading  |
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| 2. | retro_mmul_770 | 80.32 | 100.00 | Please wait, loading |
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| 3. | retro_mmul_967 | 82.12 | 81.18 | Please wait, loading |
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| 4. | retro_mmul_1744 | 71.68 | 60.22 | Please wait, loading |
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| 5. | retro_mmul_2290 | 82.91 | 62.90 | Please wait, loading |
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| 6. | retro_mmul_2560 | 66.67 | 66.67 | Please wait, loading |
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Download FASTA sequences of all ENSMMUG00000003088 retrocopies