RetrogeneDB ID: | retro_tsyr_295 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_7386:11824..12325(+) | ||
Located in intron of: | ENSTSYG00000012540 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TDGF1 | ||
Ensembl ID: | ENSTSYG00000013609 | ||
Aliases: | None | ||
Description: | teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:11701] |
Percent Identity: | 72.25 % |
Parental protein coverage: | 91.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VMVISKAF-ALGFVAGLGYHELARPPQ-GDLAPRDDRIRPQEEPAIRPRASQLVPSMGIQDSKKLNRTCC |
.M.ISKAF.ALGF.AGL..H.L..P.Q.GDLA.RDD.IRPQEEPAI.P..SQLVPS..IQDSK.L.RTCC | |
Retrocopy | IMAISKAF>ALGFIAGLDHHKLTHPLQ<GDLALRDDSIRPQEEPAICPWSSQLVPSIVIQDSKQLRRTCC |
Parental | LNGGTCMLGSFCACPPPFYGRNCEHDRRRESCGSVPHDTWLPRKCAMCKCWHGQLRCFPQAFLPGCDDLM |
LNG....L...C..P..FY.RNCEHD.RRESC...PHDTWLPRKCAM.K.WHGQL.CFP...LPGC.... | |
Retrocopy | LNG--TLLKFACPSP--FYVRNCEHDMRRESCVPMPHDTWLPRKCAMYKGWHGQLCCFP*SSLPGCGRPV |
Parental | MDEDLMASRTPELPLSACTTFMLAGICLSVQSY |
MDEDLMASRTPELP.SAC.TFMLAGICLSVQSY | |
Retrocopy | MDEDLMASRTPELPQSACITFMLAGICLSVQSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002174 | 3 retrocopies | |
Felis catus | ENSFCAG00000014508 | 1 retrocopy | |
Homo sapiens | ENSG00000241186 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003453 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000009140 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000016492 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003088 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000015167 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032494 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006143 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000017039 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014854 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000013609 | 2 retrocopies |
retro_tsyr_295 , retro_tsyr_574,
|
Tursiops truncatus | ENSTTRG00000017299 | 1 retrocopy |