Parental gene:

UQCRB, ENSLACG00000004465

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH128039.1:124098..128824(+)


>ENSLACG00000004465
CTTGCGTTCTCTGAGCCTGCCTACTTGGCAGTGTCTGCTACAAGTCGTTTGTTGGAAGGCTTTCGGAAATGGTATTATAA
TGCAGCTGGTTTTAACAAACTTGAAGGGCTAATGCGGGATGATACAATGTATGAAGATGCTGATGTGAAAGAGGCTTTGA
AAAGGATTCCAGAGAATGTTTACAATGATAGAATGTTCCGCATTAAGAGAGCGCTAGACCTATCTCTGAAGCACCAGATT
CTTCCAAAAGAACAGTGGACAAAATATGAGGAGGATGTTCCATACCTAGGACCATACTTGAAAGAAGTTATCCGTGAAAA
AAAGGAAAGGGAAGAGTGGGAAAGAAAGTAC

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 50 .72 RPM
DRP000627_kidney 49 .34 RPM
DRP000627_pelvic_fin 69 .55 RPM
DRP000627_pharynx 36 .01 RPM
DRP000627_gill 31 .96 RPM
DRP000627_tail_muscle 25 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007287 ortholog_one2one 1 retrogene
retro_amel_985,
Bos taurus ENSBTAG00000001521 ortholog_one2one 3 retrogenes
retro_btau_1641, retro_btau_374, retro_btau_417,
Canis familiaris ENSCAFG00000009449 ortholog_one2many 4 retrogenes
retro_cfam_1504, retro_cfam_1509, retro_cfam_1531, retro_cfam_792,
Choloepus hoffmanni ENSCHOG00000007884 ortholog_one2one 22 retrogenes
retro_chof_1256, retro_chof_1271, retro_chof_1468, retro_chof_1662, retro_chof_1888, retro_chof_2017, retro_chof_2170, retro_chof_2332, retro_chof_2528, retro_chof_2536, retro_chof_2554, retro_chof_257, retro_chof_2684, retro_chof_394, retro_chof_524, retro_chof_599, retro_chof_635, retro_chof_654, retro_chof_699, retro_chof_766, retro_chof_773, retro_chof_975,
Callithrix jacchus ENSCJAG00000020560 ortholog_one2one 2 retrogenes
retro_cjac_2206, retro_cjac_894,
Cavia porcellus ENSCPOG00000012149 ortholog_one2one 2 retrogenes
retro_cpor_1086, retro_cpor_866,
Dasypus novemcinctus ENSDNOG00000017312 ortholog_one2one 8 retrogenes
retro_dnov_1109, retro_dnov_1163, retro_dnov_1706, retro_dnov_2410, retro_dnov_2518, retro_dnov_369, retro_dnov_608, retro_dnov_798,
Equus caballus ENSECAG00000009780 ortholog_one2one 1 retrogene
retro_ecab_1116,
Erinaceus europaeus ENSEEUG00000001312 ortholog_one2one 1 retrogene
retro_eeur_224,
Felis catus ENSFCAG00000026302 ortholog_one2one 5 retrogenes
retro_fcat_1292, retro_fcat_178, retro_fcat_1780, retro_fcat_378, retro_fcat_558,
Homo sapiens ENSG00000156467 ortholog_one2one 2 retrogenes
retro_hsap_3261, retro_hsap_4838,
Gorilla gorilla ENSGGOG00000026528 ortholog_one2one 1 retrogene
retro_ggor_3017,
Loxodonta africana ENSLAFG00000002542 ortholog_one2one 1 retrogene
retro_lafr_727,
Myotis lucifugus ENSMLUG00000007182 ortholog_one2many 1 retrogene
retro_mluc_1601,
Macaca mulatta ENSMMUG00000008804 ortholog_one2one 3 retrogenes
retro_mmul_2053, retro_mmul_2065, retro_mmul_2581,
Mus musculus ENSMUSG00000021520 ortholog_one2one 4 retrogenes
retro_mmus_1175, retro_mmus_1628, retro_mmus_2610, retro_mmus_514,
Nomascus leucogenys ENSNLEG00000026670 ortholog_one2many 1 retrogene
retro_nleu_1357,
Oryctolagus cuniculus ENSOCUG00000008113 ortholog_one2one 3 retrogenes
retro_ocun_1149, retro_ocun_345, retro_ocun_570,
Otolemur garnettii ENSOGAG00000004302 ortholog_one2one 1 retrogene
retro_ogar_1451,
Ochotona princeps ENSOPRG00000008892 ortholog_one2many 2 retrogenes
retro_opri_109, retro_opri_688,
Pongo abelii ENSPPYG00000018763 ortholog_one2one 2 retrogenes
retro_pabe_2703, retro_pabe_3762,
Pteropus vampyrus ENSPVAG00000012321 ortholog_one2one 1 retrogene
retro_pvam_498,
Rattus norvegicus ENSRNOG00000024967 ortholog_one2many 1 retrogene
retro_rnor_290,
Sorex araneus ENSSARG00000002999 ortholog_one2one 3 retrogenes
retro_sara_460, retro_sara_52, retro_sara_704,
Ictidomys tridecemlineatus ENSSTOG00000008017 ortholog_one2many 1 retrogene
retro_itri_46,
Tupaia belangeri ENSTBEG00000002453 ortholog_one2one 28 retrogenes
retro_tbel_1046, retro_tbel_1268, retro_tbel_1357, retro_tbel_1568, retro_tbel_1583, retro_tbel_1656, retro_tbel_1688, retro_tbel_169, retro_tbel_1858, retro_tbel_2106, retro_tbel_2217, retro_tbel_248, retro_tbel_2675, retro_tbel_274, retro_tbel_2883, retro_tbel_2885, retro_tbel_2893, retro_tbel_2942, retro_tbel_3129, retro_tbel_3156, retro_tbel_3291, retro_tbel_3492, retro_tbel_3662, retro_tbel_4334, retro_tbel_4539, retro_tbel_457, retro_tbel_517, retro_tbel_784,
Tarsius syrichta ENSTSYG00000010502 ortholog_one2one 2 retrogenes
retro_tsyr_1114, retro_tsyr_898,
Tursiops truncatus ENSTTRG00000007348 ortholog_one2one 3 retrogenes
retro_ttru_1106, retro_ttru_501, retro_ttru_754,
Drosophila melanogaster FBgn0030733 ortholog_one2many 1 retrogene
retro_dmel_22,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_127 83.33 82.05
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Download FASTA sequences of all ENSLACG00000004465 retrocopies