Parental gene:

ENSLACG00000012468

Aliases:None
Description:None
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH126641.1:721878..762812(-)


>ENSLACG00000012468
ATGCCGAAGGTGGTGTCGCGCTCCGTGGTTTGCTCCGATACCCGGGACCGCGAGGAGTACGACGACGGGGAGAAGCCGCT
GCACGTCTATTATTGCCTGTGCGGACAGATGGTGTTGGTCCTAGATTGCCAACTGGAAAAGCTACCCATGAGGCCAAGGG
ACAGAGCGAGAGTTATTGATGGAGCCAAGCATGCTCATAAGTTCTGTACCACAGAGGAAGAAGAAAGCGTTTACCTCCGA
CGACCTGAAGGGATAGAACGGCAGTACCGAAAGAAGTGTGGCAAGTGTGGACTGCTGCTCTTTTACCAGCACCAACAGAA
AAACGCCCCAGTCACGTTTATAGTGGACGGAGCTGTGGTCAAGTTTGGCCAAGGATTCGGAAGCACGTATGTCTACAACC
CGAAGCAAGAGCCTCCAAAGAAGGTAATGATGACCAAACGCACCAAGGACATGGGCAAGTTCAGCTCCGTGACTGTGTCG
ACCATTGATGAGGAAGAAGAGGAAATCGAGGCGAGGGAAATAGCAGACTCGTATGCACAGAACGCCAAGGTGATCGAGAA
GCAGCTGGAGCGCAAGGGTATGAGCAAGCGGCGGCTCCAGGAGCTGGCTGAGTTGGAGGCAAAGAAAGCCAAAATGAAAG
GCACGCTGATCGACAACCAGTTCAAGTGA

Library Parental gene expression (RPM)
DRP000627_pectoral_fin 43 .51 RPM
DRP000627_kidney 24 .78 RPM
DRP000627_pelvic_fin 55 .27 RPM
DRP000627_pharynx 18 .78 RPM
DRP000627_gill 27 .00 RPM
DRP000627_tail_muscle 15 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005111 ortholog_many2many 1 retrogene
retro_cjac_311,
Homo sapiens ENSG00000018610 ortholog_one2many 1 retrogene
retro_hsap_4044,
Gorilla gorilla ENSGGOG00000013324 ortholog_one2many 1 retrogene
retro_ggor_2711,
Myotis lucifugus ENSMLUG00000015751 ortholog_many2many 1 retrogene
retro_mluc_72,
Macaca mulatta ENSMMUG00000022665 ortholog_one2many 1 retrogene
retro_mmul_2333,
Mus musculus ENSMUSG00000006423 ortholog_one2many 1 retrogene
retro_mmus_1715,
Nomascus leucogenys ENSNLEG00000014862 ortholog_one2many 1 retrogene
retro_nleu_2057,
Otolemur garnettii ENSOGAG00000012474 ortholog_many2many 1 retrogene
retro_ogar_145,
Pongo abelii ENSPPYG00000020670 ortholog_many2many 1 retrogene
retro_pabe_177,
Pan troglodytes ENSPTRG00000022224 ortholog_many2many 1 retrogene
retro_ptro_104,
Sorex araneus ENSSARG00000003163 ortholog_many2many 1 retrogene
retro_sara_5,
Sarcophilus harrisii ENSSHAG00000006319 ortholog_many2many 1 retrogene
retro_shar_16,
Ictidomys tridecemlineatus ENSSTOG00000011579 ortholog_many2many 1 retrogene
retro_itri_103,
Tarsius syrichta ENSTSYG00000008043 ortholog_one2many 1 retrogene
retro_tsyr_634,
Tursiops truncatus ENSTTRG00000013101 ortholog_one2many 2 retrogenes
retro_ttru_231, retro_ttru_77,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_59 85.63 74.77
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Download FASTA sequences of all ENSLACG00000012468 retrocopies