Parental gene:

CXorf56, ENSPPYG00000020670

Aliases:None
Description:UPF0428 protein CXorf56 homolog [Source:RefSeq peptide;Acc:NP_001125661]
Organism:Orangutan (Pongo abelii)
Coordinates:X:118475265..118502815(-)


>ENSPPYG00000020670
ATGCCGAAAGTAGTGTCTCGGTCAGTAGTCTGCTCTGACACTCGGGACCGGGAGGAATATGACGACGGCGAGAAGCCCCT
CCATGTTTACTACTGTTTGTGCGGCCAGATGGTCCTAGTGCTGGACTGCCAGTTAGAGAAATTGCCCATGAGGCCCCGGG
ACCGGTCCCGTGTGATTGATGCTGCCAAACATGCCCATAAGTTTTGTAACACAGAAGACGAGGAGACTATGTATCTGCGG
AGACCTGAAGGCATTGAACGACAGTACAGGAAGAAATGTGCAAAGTGTGGACTGCCGCTCTTCTACCAATCCCAGCCAAA
GAATGCTCCTGTTACCTTCATTGTGGATGGAGCAGTAGTCAAGTTTGGCCAGGGCTTTGGGAAAACGAACATATATACTC
AGAAACAAGAGCCTCCTAAGAAGGTGATGATGACCAAACGGACCAAAGACATGGGCAAGTTCAGTTCTGTCACTGTGTCT
ACCATTGATGAAGAGGAAGAGGAGATTGAGGCTAGGGAAGTTGCTGACTCATATGCACAGAATGCCAAAGTGATTGAAAA
ACAGCTGGAGCGCAAAGGCATGAGTAAGAGGCGACTGCAAGAGCTGGCTGAATTGGAAGCCAAGAAAGCGAAAATGAAGG
GGACCTTGATTGACAACCAGTTCAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .06 RPM
SRP007412_cerebellum 7 .90 RPM
SRP007412_heart 2 .38 RPM
SRP007412_kidney 8 .35 RPM
SRP007412_liver 3 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005111 possible_ortholog 1 retrogene
retro_cjac_311,
Homo sapiens ENSG00000018610 ortholog_one2many 1 retrogene
retro_hsap_4044,
Gorilla gorilla ENSGGOG00000013324 possible_ortholog 1 retrogene
retro_ggor_2711,
Latimeria chalumnae ENSLACG00000012468 ortholog_many2many 1 retrogene
retro_lcha_59,
Myotis lucifugus ENSMLUG00000015751 ortholog_one2one 1 retrogene
retro_mluc_72,
Macaca mulatta ENSMMUG00000022665 possible_ortholog 1 retrogene
retro_mmul_2333,
Mus musculus ENSMUSG00000006423 ortholog_one2many 1 retrogene
retro_mmus_1715,
Nomascus leucogenys ENSNLEG00000014862 ortholog_one2many 1 retrogene
retro_nleu_2057,
Otolemur garnettii ENSOGAG00000012474 ortholog_one2many 1 retrogene
retro_ogar_145,
Pan troglodytes ENSPTRG00000022224 possible_ortholog 1 retrogene
retro_ptro_104,
Sorex araneus ENSSARG00000003163 possible_ortholog 1 retrogene
retro_sara_5,
Sarcophilus harrisii ENSSHAG00000006319 ortholog_many2many 1 retrogene
retro_shar_16,
Ictidomys tridecemlineatus ENSSTOG00000011579 ortholog_one2many 1 retrogene
retro_itri_103,
Tarsius syrichta ENSTSYG00000008043 possible_ortholog 1 retrogene
retro_tsyr_634,
Tursiops truncatus ENSTTRG00000013101 possible_ortholog 2 retrogenes
retro_ttru_231, retro_ttru_77,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_177 96.85 100.00
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Download FASTA sequences of all ENSPPYG00000020670 retrocopies