Parental gene: | PSMC5, ENSMODG00000009873 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Source:HGNC Symbol;Acc:9552] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 2:211095252..211100457(+) |
>ENSMODG00000009873
ATGGCGCTGGACGGACCGGAGCAGCAGATGGAGTTGGAGGAAGGCAAGGCAGGGAGTGGACTGCGACAGTATTACCTGTC
AAAAATCGAGGAACTTCAGCTGATTGTTAATGACAAGAGTCAAAACCTCCGTCGTCTACAAGCACAAAGAAATGAGCTAA
ATGCAAAAGTGCGCCTACTACGGGAGGAGCTGCAGCTGTTACAGGAGCAGGGGTCCTATGTGGGGGAAGTGGTCCGAGCT
ATGGATAAAAAGAAAGTTTTGGTCAAGGTACATCCTGAGGGAAAGTTTGTTGTGGATGTAGATAAGAACATCGACATCAA
TGATGTGACACCCAATTGCCGTGTGGCCCTGCGAAATGACAGCTACACCCTGCACAAAATTCTGCCCAACAAAGTAGACC
CATTGGTATCCTTGATGATGGTGGAAAAAGTGCCTGATTCAACCTATGAGATGATCGGTGGCTTAGACAAGCAGATTAAG
GAGATCAAAGAAGTGATTGAATTGCCTGTTAAACATCCTGAGCTCTTTGAGGCATTAGGCATTGCACAGCCCAAGGGTGT
GCTGTTGTATGGACCTCCAGGTACTGGCAAAACTCTCTTGGCTCGGGCTGTGGCTCATCACACTGACTGCACCTTTATTC
GTGTCTCAGGCTCAGAACTGGTACAGAAATTCATTGGTGAAGGGGCACGGATGGTTCGGGAGCTGTTTGTCATGGCCCGA
GAACATGCTCCTTCCATCATCTTTATGGATGAGATTGACTCCATTGGTTCCTCGAGGCTAGAAGGTGGCTCTGGTGGAGA
CAGCGAAGTACAGCGAACAATGCTGGAGCTGCTCAACCAACTGGATGGTTTTGAAGCCACTAAGAACATCAAGGTTATCA
TGGCCACCAACAGAATTGATATCCTGGACTCTGCTCTACTTCGCCCTGGGAGAATTGACAGGAAGATCGAGTTTCCGCCC
CCTAATGAGGAGGCACGACTGGATATCTTGAAGATTCATTCTCGGAAAATGAACCTGACTCGAGGCATCAATCTACGGAA
AATTGCAGAGCTCATGCCTGGGGCATCAGGGGCTGAAGTGAAGGGTGTATGCACAGAAGCTGGAATGTATGCCCTCCGTG
AAAGGCGTGTCCACGTCACCCAAGAAGACTTTGAGATGGCAGTAGCCAAGGTCATGCAAAAAGATAGTGAGAAGAACATG
TCCATCAAGAAACTATGGAAATGA
ATGGCGCTGGACGGACCGGAGCAGCAGATGGAGTTGGAGGAAGGCAAGGCAGGGAGTGGACTGCGACAGTATTACCTGTC
AAAAATCGAGGAACTTCAGCTGATTGTTAATGACAAGAGTCAAAACCTCCGTCGTCTACAAGCACAAAGAAATGAGCTAA
ATGCAAAAGTGCGCCTACTACGGGAGGAGCTGCAGCTGTTACAGGAGCAGGGGTCCTATGTGGGGGAAGTGGTCCGAGCT
ATGGATAAAAAGAAAGTTTTGGTCAAGGTACATCCTGAGGGAAAGTTTGTTGTGGATGTAGATAAGAACATCGACATCAA
TGATGTGACACCCAATTGCCGTGTGGCCCTGCGAAATGACAGCTACACCCTGCACAAAATTCTGCCCAACAAAGTAGACC
CATTGGTATCCTTGATGATGGTGGAAAAAGTGCCTGATTCAACCTATGAGATGATCGGTGGCTTAGACAAGCAGATTAAG
GAGATCAAAGAAGTGATTGAATTGCCTGTTAAACATCCTGAGCTCTTTGAGGCATTAGGCATTGCACAGCCCAAGGGTGT
GCTGTTGTATGGACCTCCAGGTACTGGCAAAACTCTCTTGGCTCGGGCTGTGGCTCATCACACTGACTGCACCTTTATTC
GTGTCTCAGGCTCAGAACTGGTACAGAAATTCATTGGTGAAGGGGCACGGATGGTTCGGGAGCTGTTTGTCATGGCCCGA
GAACATGCTCCTTCCATCATCTTTATGGATGAGATTGACTCCATTGGTTCCTCGAGGCTAGAAGGTGGCTCTGGTGGAGA
CAGCGAAGTACAGCGAACAATGCTGGAGCTGCTCAACCAACTGGATGGTTTTGAAGCCACTAAGAACATCAAGGTTATCA
TGGCCACCAACAGAATTGATATCCTGGACTCTGCTCTACTTCGCCCTGGGAGAATTGACAGGAAGATCGAGTTTCCGCCC
CCTAATGAGGAGGCACGACTGGATATCTTGAAGATTCATTCTCGGAAAATGAACCTGACTCGAGGCATCAATCTACGGAA
AATTGCAGAGCTCATGCCTGGGGCATCAGGGGCTGAAGTGAAGGGTGTATGCACAGAAGCTGGAATGTATGCCCTCCGTG
AAAGGCGTGTCCACGTCACCCAAGAAGACTTTGAGATGGCAGTAGCCAAGGTCATGCAAAAAGATAGTGAGAAGAACATG
TCCATCAAGAAACTATGGAAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000002393 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000087191 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006803 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016769 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004150 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004329 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008296 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000002653 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008533 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009525 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000008945 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000010546 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000006984 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1411 | 71.63 | 52.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1583 | 54.51 | 58.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000009873 retrocopies