Parental gene:

PSMC5, ENSPPYG00000008533

Aliases:None
Description:26S protease regulatory subunit 8 [Source:RefSeq peptide;Acc:NP_001127417]
Organism:Orangutan (Pongo abelii)
Coordinates:17:53540926..53545455(+)


>ENSPPYG00000008533
ATGGCGCTTGACGGACCAGAGCAGATGGAGCTGGAGGAGGGGAAGGCAGGCAGCGGACTCCGCCAATATTATCTGTCCAA
GATTGAAGAACTCCAGCTGATTGTGAATGATAAGAGCCAAAACCTCCGGAGGCTGCAGGCACAGAGGAATGAACTAAATG
CTAAAGTTCGCCTACTACGGGAGGAGCTACAGCTGCTGCAGGAGCAGGGCTCCTATGTGGGGGAAGTAGTCCGGGCCATG
GATAAGAAGAAAGTGTTGGTCAAGGTACATCCTGAAGGTAAATTTGTTGTAGACGTGGACAAAAACATTGACATCAATGA
CGTGACACCCAATTGCCGGGTGGCTCTAAGGAATGACAGCTACACTCTGCACAAGATCCTGCCCAACAAGGTAGACCCAT
TAGTGTCACTGATGATGGTGGAGAAAGTACCAGATTCAACTTACGAGATGATTGGTGGACTGGACAAACAGATCAAGGAG
ATCAAAGAAGTGATCGAGCTGCCTGTTAAGCATCCTGAGCTCTTCGAAGCACTGGGCATTGCTCAGCCCAAGGGAGTGCT
GCTGTATGGACCTCCAGGCACTGGGAAGACACTGTTGGCCCGGGCTGTGGCTCATCATACGGACTGTACCTTTATTCGTG
TCTCTGGCTCTGAATTGGTACAGAAATTCATAGGGGAAGGGGCAAGAATGGTGAGGGAGCTGTTTGTCATGGCACGGGAA
CATGCTCCGTCTATCATCTTCATGGACGAAATCGACTCCATCGGCTCCTCGCGGCTGGAGGGGGGTTCTGGAGGGGACAG
TGAAGTGCAGCGCACGATGCTGGAGTTGCTCAACCAGCTCGACGGCTTTGAGGCCACCAAGAACATCAAGGTTATCATGG
CTACTAATAGGATTGATATCCTGGACTCGGCACTGCTTCGCCCAGGGCGCATTGACAGAAAAATTGAATTCCCACCCCCC
AATGAGGAGGCCCGGCTGGACATTTTGAAGATTCATTCTCGGAAGATGAACCTGACCCGGGGGATCAACCTGAGAAAAAT
TGCTGAACTCATGCCAGGAGCATCAGGGGCTGAAGTGAAGGGCGTGTGCACAGAAGCTGGCATGTATGCCCTGCGAGAAC
GGCGAGTCCATGTCACTCAGGAGGACTTTGAGATGGCAGTAGCCAAGGTCATGCAGAAGGACAGTGAGAAAAACATGTCC
ATCAAGAAATTATGGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 184 .17 RPM
SRP007412_cerebellum 168 .30 RPM
SRP007412_heart 64 .51 RPM
SRP007412_kidney 161 .59 RPM
SRP007412_liver 69 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000002393 ortholog_one2many 1 retrogene
retro_dnov_1508,
Homo sapiens ENSG00000087191 ortholog_one2one 1 retrogene
retro_hsap_1949,
Gorilla gorilla ENSGGOG00000006803 ortholog_one2one 1 retrogene
retro_ggor_1418,
Macaca mulatta ENSMMUG00000016769 ortholog_one2one 1 retrogene
retro_mmul_1354,
Monodelphis domestica ENSMODG00000009873 ortholog_one2many 2 retrogenes
retro_mdom_1411, retro_mdom_1583,
Nomascus leucogenys ENSNLEG00000004150 ortholog_one2one 1 retrogene
retro_nleu_1480,
Oryctolagus cuniculus ENSOCUG00000004329 ortholog_many2many 1 retrogene
retro_ocun_78,
Otolemur garnettii ENSOGAG00000008296 ortholog_one2many 1 retrogene
retro_ogar_911,
Procavia capensis ENSPCAG00000002653 ortholog_one2many 1 retrogene
retro_pcap_352,
Pan troglodytes ENSPTRG00000009525 ortholog_one2one 1 retrogene
retro_ptro_1303,
Ictidomys tridecemlineatus ENSSTOG00000008945 ortholog_one2many 1 retrogene
retro_itri_1046,
Tupaia belangeri ENSTBEG00000010546 ortholog_one2many 3 retrogenes
retro_tbel_1411, retro_tbel_2422, retro_tbel_3450,
Tursiops truncatus ENSTTRG00000006984 ortholog_one2many 1 retrogene
retro_ttru_1532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1606 76.60 57.88
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Download FASTA sequences of all ENSPPYG00000008533 retrocopies