Parental gene:

Psma2, ENSMUSG00000015671

Aliases:Psma2, Lmpc3
Description:proteasome (prosome, macropain) subunit, alpha type 2 [Source:MGI Symbol;Acc:MGI:104885]
Organism:Mouse (Mus musculus)
Coordinates:13:14613241..14625671(+)


>ENSMUSG00000015671
ATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGCCCATCTGGTAAGCTTGTCCAGATTGAATATGCCTTGGC
TGCGGTAGCTGGAGGGGCCCCGTCAGTGGGGATTAAAGCTGCAAATGGCGTAGTATTAGCAACCGAGAAAAAGCAGAAAT
CCATCCTGTATGATGAAAGGAGTGTTCACAAGGTGGAGCCCATTACCAAGCACATCGGTTTGGTGTACAGTGGCATGGGC
CCCGATTACAGAGTACTTGTACACAGAGCTCGGAAACTTGCTCAGCAATACTACCTTGTTTACCAAGAACCCATTCCCAC
AGCCCAGCTGGTACAGAGAGTAGCCTCTGTGATGCAGGAGTACACGCAGTCAGGTGGTGTTCGTCCATTTGGTGTTTCTT
TACTCATTTGTGGGTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAGGCC
ACAGCAATGGGAAAGAACTATGTGAACGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGACCTAGAACTGGAGGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAACATAGAAGTTGGGATCTGCA
ATGAGGCTGGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGATTACCTGGCTGCCATAGCGTGA

Library Parental gene expression (RPM)
SRP007412_brain 53 .83 RPM
SRP007412_cerebellum 49 .89 RPM
SRP007412_heart 43 .74 RPM
SRP007412_kidney 57 .56 RPM
SRP007412_liver 44 .27 RPM
SRP007412_testis 21 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009433 ortholog_one2one 3 retrogenes
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Bos taurus ENSBTAG00000000990 ortholog_one2one 3 retrogenes
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2one 1 retrogene
retro_chof_893,
Cavia porcellus ENSCPOG00000013134 ortholog_one2one 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2one 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2one 2 retrogenes
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG00000106588 possible_ortholog 2 retrogenes
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG00000006538 possible_ortholog 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Mustela putorius furo ENSMPUG00000018145 ortholog_one2one 1 retrogene
retro_mputfur_548,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2one 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2one 1 retrogene
retro_ocun_774,
Otolemur garnettii ENSOGAG00000016805 ortholog_one2one 1 retrogene
retro_ogar_197,
Pongo abelii ENSPPYG00000017612 ortholog_one2one 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2one 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG00000049920 ortholog_one2one 2 retrogenes
retro_rnor_2041, retro_rnor_2769,
Sus scrofa ENSSSCG00000020769 ortholog_one2one 3 retrogenes
retro_sscr_1082, retro_sscr_419, retro_sscr_440,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2one 2 retrogenes
retro_tsyr_132, retro_tsyr_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1104 90.99 99.57
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2. retro_mmus_1105 92.74 99.57
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3. retro_mmus_1215 88.48 70.09
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4. retro_mmus_1320 56.91 52.14
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Download FASTA sequences of all ENSMUSG00000015671 retrocopies