Parental gene:

PSMA2, ENSSSCG00000020769

Aliases:None
Description:Proteasome subunit alpha type [Source:UniProtKB/TrEMBL;Acc:I3LAB6]
Organism:Pig (Sus scrofa)
Coordinates:18:56857685..56868920(+)


>ENSSSCG00000020769
ATGGCGGAGCGTGGTTACAGCTTTTCGCTGACTACATTCAGCCCATCTGGTAAACTTGTACAGATTGAATATGCTTTGGC
TGCTGTAGCTGGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTCTTAGCAACTGAGAAGAAACAGAAAT
CCATCCTGTATGACGAGCGAAGTGTCCACAAAGTGGAGCCCATCACCAAGCACATAGGTTTGGTGTATAGCGGCATGGGC
CCAGACTACAGAGTGCTTGTGCACAGGGCTCGAAAACTAGCTCAGCAATACTATCTCGTTTACCAAGAACCCATTCCCAC
AGCTCAGCTGGTACAGAGAGTAGCTTCCGTGATGCAAGAATACACCCAGTCAGGTGGTGTTCGTCCATTTGGAGTGTCTT
TGCTTATTTGTGGTTGGAATGAGGGACGACCGTATTTATTTCAGTCAGATCCATCTGGAGCCTACTTTGCTTGGAAAGCC
ACTGCAATGGGAAAGAACTATGTGAATGGGAAAACGTTCCTTGAGAAAAGATACAATGAAGATCTGGAACTTGAAGATGC
CATTCACACAGCCATATTAACCCTAAAGGAGAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTTGGCATCTGCA
ATGAAGCCGGATTTAGGAGGCTTACTCCCACCGAAGTTAAGGATTACCTGGCTGCCATTGCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 44 .07 RPM
SRP014902_testis 39 .89 RPM
SRP018288_heart 67 .53 RPM
SRP018288_kidney 93 .97 RPM
SRP018288_liver 60 .13 RPM
SRP018288_lung 29 .12 RPM
SRP018856_adipose 90 .16 RPM
SRP035408_brain 65 .11 RPM
SRP035408_liver 70 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009433 ortholog_one2one 3 retrogenes
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Bos taurus ENSBTAG00000000990 ortholog_one2one 3 retrogenes
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG00000000644 ortholog_one2one 1 retrogene
retro_chof_893,
Cavia porcellus ENSCPOG00000013134 ortholog_one2one 1 retrogene
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG00000011910 ortholog_one2one 2 retrogenes
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG00000015835 ortholog_one2one 2 retrogenes
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG00000106588 possible_ortholog 2 retrogenes
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG00000006538 possible_ortholog 1 retrogene
retro_ggor_735,
Myotis lucifugus ENSMLUG00000010086 possible_ortholog 2 retrogenes
retro_mluc_1050, retro_mluc_135,
Mustela putorius furo ENSMPUG00000018145 ortholog_one2one 1 retrogene
retro_mputfur_548,
Mus musculus ENSMUSG00000015671 ortholog_one2one 4 retrogenes
retro_mmus_1104, retro_mmus_1105, retro_mmus_1215, retro_mmus_1320,
Nomascus leucogenys ENSNLEG00000003177 ortholog_one2one 1 retrogene
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG00000012092 ortholog_one2one 1 retrogene
retro_ocun_774,
Otolemur garnettii ENSOGAG00000016805 ortholog_one2one 1 retrogene
retro_ogar_197,
Pongo abelii ENSPPYG00000017612 ortholog_one2one 2 retrogenes
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG00000019120 ortholog_one2one 2 retrogenes
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG00000049920 ortholog_one2one 2 retrogenes
retro_rnor_2041, retro_rnor_2769,
Tarsius syrichta ENSTSYG00000014299 ortholog_one2one 2 retrogenes
retro_tsyr_132, retro_tsyr_246,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_419 75.16 64.96
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2. retro_sscr_440 75.16 64.96
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3. retro_sscr_1082 66.67 58.97
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Download FASTA sequences of all ENSSSCG00000020769 retrocopies