RetrogeneDB ID:

retro_ogar_197

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873573.1:8226412..8227117(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000025507
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000016805
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_197
ATGGCGGAGCACGGGTACAGCTTTTCGCTGACAACATTCAGCCCATCTGGTAAACTTGTTCAGATTGAATATGCATTGGC
TGCTGTAGCTGGAGGAGCCCCTTCAGTGGGAATTAAAGCTGCAAATGGTGTGGTATTAGCAACTGAGAAGAAACAGAAAT
CCATTCTGTATGATGAACGAAGTGTACACAAAGTGGAACCAATTACCAAGCACATAGGTTTGGTGTACAGCGGCATGGGC
CCAGATTACAGAGTGCTTGTGCACAGAGCTCGAAAACTAGCTCAGCAATACTATCTTGTTTACCAAGAACCCATTCCCAC
GGCTCAGCTGGTACAAAGAGTAGCTTCTGTGATGCAGGAATATACCCAGTCAGGTGGTGTCCGTCCATTTGGAGTTTCTT
TACTTATTTGTGGTTGGAATGAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCATACTTTGCCTGGAAAGCC
ACAGCAATGGGAAAGAACTACGTAAATGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGATCTGGAACTTGAAGATGC
TATTCATACAGCTATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAAATGACAGAAGATAACATAGAAGTTGGAATCTGTA
ACGAAGCTGGATTTAGGAGGCTTACTCCAACTGAAGTTAAGGATTACTTGGCTGCCATAGCATAA

ORF - retro_ogar_197 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.57 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK
MAE.GYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK
RetrocopyMAEHGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK
ParentalHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN
HIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN
RetrocopyHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN
ParentalEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV
EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV
RetrocopyEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV
ParentalGICNEAGFRRLTPTEVKDYLAAIA
GICNEAGFRRLTPTEVKDYLAAIA
RetrocopyGICNEAGFRRLTPTEVKDYLAAIA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_197 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000094333 retrocopies
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Bos taurus ENSBTAG000000009903 retrocopies
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG000000006441 retrocopy
retro_chof_893,
Cavia porcellus ENSCPOG000000131341 retrocopy
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG000000119102 retrocopies
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG000000158352 retrocopies
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG000001065882 retrocopies
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG000000065381 retrocopy
retro_ggor_735,
Myotis lucifugus ENSMLUG000000100862 retrocopies
retro_mluc_1050, retro_mluc_135,
Mustela putorius furoENSMPUG000000181451 retrocopy
retro_mputfur_548,
Mus musculus ENSMUSG000000156714 retrocopies
retro_mmus_1104, retro_mmus_1105, retro_mmus_1215, retro_mmus_1320,
Nomascus leucogenys ENSNLEG000000031771 retrocopy
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG000000120921 retrocopy
retro_ocun_774,
Otolemur garnettii ENSOGAG00000016805 1 retrocopy
retro_ogar_197 ,
Pongo abelii ENSPPYG000000176122 retrocopies
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG000000191202 retrocopies
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG000000499202 retrocopies
retro_rnor_2041, retro_rnor_2769,
Sus scrofa ENSSSCG000000207693 retrocopies
retro_sscr_1082, retro_sscr_419, retro_sscr_440,
Tarsius syrichta ENSTSYG000000142992 retrocopies
retro_tsyr_132, retro_tsyr_246,


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