RetrogeneDB ID:

retro_mputfur_548

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896919.1:6548653..6549185(+)
Located in intron of:ENSMPUG00000017358
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Psma2
Ensembl ID:ENSMPUG00000018145
Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type 2 [Source:MGI Symbol;Acc:MGI:104885]


Retrocopy-Parental alignment summary:






>retro_mputfur_548
AAATCCATTCTTTATGATGAGCAAGGTGTACACAAAGTAGAACCAACTACTGAGCATGTAGGCTTGGTGTATAGTGGCAG
GGGCCCAGATTATAGAGTGCTTGTGCATAGAACACAGAAACTAGCTCAGTGATACTATCTTGTTAAGCAAGAACCTATTC
TAGCAGCTCAGCTGGTATAGGAAGTAGTTTCTGTGATGCAAGAATATACTCATTCAGGTGGTATTCATCCATTCGGAGTT
TCTTTACTATTTGTGGTTGGAATGAGGGGCAACTGTATTTATTTCAGTCAGATCCATCTGGAGTTCACTTTGCCTGGAAG
GCCTCAGCAATGAGAAAGAACTATGTGAATGGGAAGGCTTTCCTCAAGAAAAATAACAAAGACCTGGAACTTGAAGATTC
CATTCATATGGCCTTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAACATAGAAGTTGGAACTGCAGTGAAGCCAG
ATTTAGGAGGCCTACTTCAACTGAAGTTAAGGATTACTAGGCTGTTATTAGT

ORF - retro_mputfur_548 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.09 %
Parental protein coverage: 77.78 %
Number of stop codons detected: 3
Number of frameshifts detected: 2


Retrocopy - Parental Gene Alignment:

ParentalKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT
KSILYDE..VHKVEP.T.H.GLVYSG.GPDYRVLVHR..KLAQ.YYLV.QEPI..AQLV..V.SVMQEYT
RetrocopyKSILYDEQGVHKVEPTTEHVGLVYSGRGPDYRVLVHRTQKLAQ*YYLVKQEPILAAQLV*EVVSVMQEYT
ParentalQSGGVRPFGVSLL-ICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTA
.SGG..PFGVSLL.ICGWNEG..YLFQSDPSG..FAWKA.AM.KNYVNGK.FL.K..N.DLELED.IH.A
RetrocopyHSGGIHPFGVSLL<ICGWNEGQLYLFQSDPSGVHFAWKASAMRKNYVNGKAFLKKN-NKDLELEDSIHMA
ParentalILTLKESFEGQMTEDNIEVGI-CNEAGFRRLTPTEVKDYLAAIA
...LKESFEGQMTEDNIEVG..C.EA.FRR.T.TEVKDY.A.I.
Retrocopy---LKESFEGQMTEDNIEVGT<CSEARFRRPTSTEVKDY*AVIS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_548 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_548 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 36 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000094333 retrocopies
retro_amel_1029, retro_amel_1336, retro_amel_1379,
Bos taurus ENSBTAG000000009903 retrocopies
retro_btau_296, retro_btau_384, retro_btau_889,
Choloepus hoffmanni ENSCHOG000000006441 retrocopy
retro_chof_893,
Cavia porcellus ENSCPOG000000131341 retrocopy
retro_cpor_1512,
Dasypus novemcinctus ENSDNOG000000119102 retrocopies
retro_dnov_2202, retro_dnov_724,
Echinops telfairi ENSETEG000000158352 retrocopies
retro_etel_1569, retro_etel_2022,
Homo sapiens ENSG000001065882 retrocopies
retro_hsap_2199, retro_hsap_908,
Gorilla gorilla ENSGGOG000000065381 retrocopy
retro_ggor_735,
Myotis lucifugus ENSMLUG000000100862 retrocopies
retro_mluc_1050, retro_mluc_135,
Mustela putorius furoENSMPUG00000018145 1 retrocopy
retro_mputfur_548 ,
Mus musculus ENSMUSG000000156714 retrocopies
retro_mmus_1104, retro_mmus_1105, retro_mmus_1215, retro_mmus_1320,
Nomascus leucogenys ENSNLEG000000031771 retrocopy
retro_nleu_329,
Oryctolagus cuniculus ENSOCUG000000120921 retrocopy
retro_ocun_774,
Otolemur garnettii ENSOGAG000000168051 retrocopy
retro_ogar_197,
Pongo abelii ENSPPYG000000176122 retrocopies
retro_pabe_2076, retro_pabe_783,
Pan troglodytes ENSPTRG000000191202 retrocopies
retro_ptro_1670, retro_ptro_628,
Rattus norvegicus ENSRNOG000000499202 retrocopies
retro_rnor_2041, retro_rnor_2769,
Sus scrofa ENSSSCG000000207693 retrocopies
retro_sscr_1082, retro_sscr_419, retro_sscr_440,
Tarsius syrichta ENSTSYG000000142992 retrocopies
retro_tsyr_132, retro_tsyr_246,


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