Parental gene:

Rps8, ENSMUSG00000047675

Aliases:None
Description:ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
Organism:Mouse (Mus musculus)
Coordinates:4:117153826..117156243(-)


>ENSMUSG00000047675
ATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGTAAGCGAAAACCCTACCACAAGAAGCGAAAGTA
TGAGCTGGGACGGCCCGCTGCCAACACGAAGATTGGCCCTCGCCGCATACACACAGTCCGAGTTCGAGGAGGCAATAAGA
AGTACCGTGCCCTGAGATTGGATGTGGGGAACTTTTCCTGGGGCTCTGAGTGTTGTACTCGCAAAACAAGGATCATTGAT
GTTGTCTACAATGCATCCAACAACGAGCTTGTCCGCACCAAGACCCTGGTGAAGAACTGCATCGTGCTTATTGACAGCAC
GCCGTACCGACAGTGGTACGAGTCCCACTATGCACTGCCCCTGGGCCGCAAGAAGGGGGCCAAGCTGACTCCTGAGGAGG
AAGAGATTTTAAACAAAAAACGATCAAAGAAAATTCAAAAGAAATACGATGAAAGGAAAAAGAATGCCAAAATCAGCAGC
CTCCTGGAGGAGCAGTTCCAGCAGGGCAAGCTTCTAGCCTGTATTGCCTCACGACCAGGCCAGTGTGGCAGAGCAGACGG
CTATGTGCTCGAAGGCAAGGAGCTGGAGTTCTATCTGCGGAAGATCAAAGCCCGGAAAGGCAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 63 .94 RPM
SRP007412_cerebellum 45 .81 RPM
SRP007412_heart 115 .74 RPM
SRP007412_kidney 96 .29 RPM
SRP007412_liver 88 .04 RPM
SRP007412_testis 46 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015697 ortholog_one2one 1 retrogene
retro_acar_124,
Choloepus hoffmanni ENSCHOG00000008785 ortholog_one2one 10 retrogenes
retro_chof_1197, retro_chof_1258, retro_chof_1466, retro_chof_1638, retro_chof_2066, retro_chof_2617, retro_chof_2633, retro_chof_274, retro_chof_331, retro_chof_951,
Callithrix jacchus ENSCJAG00000004197 ortholog_one2many 5 retrogenes
retro_cjac_1068, retro_cjac_181, retro_cjac_3138, retro_cjac_6, retro_cjac_951,
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
retro_dord_429,
Felis catus ENSFCAG00000022996 possible_ortholog 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Gorilla gorilla ENSGGOG00000005645 possible_ortholog 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Loxodonta africana ENSLAFG00000027596 ortholog_one2one 3 retrogenes
retro_lafr_531, retro_lafr_647, retro_lafr_904,
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 ortholog_one2many 2 retrogenes
retro_mmul_275, retro_mmul_70,
Monodelphis domestica ENSMODG00000028389 ortholog_one2one 1 retrogene
retro_mdom_998,
Nomascus leucogenys ENSNLEG00000014147 possible_ortholog 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pongo abelii ENSPPYG00000001426 ortholog_one2one 1 retrogene
retro_pabe_147,
Rattus norvegicus ENSRNOG00000018768 ortholog_one2one 2 retrogenes
retro_rnor_222, retro_rnor_235,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_293 95.33 72.12
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2. retro_mmus_364 87.50 92.31
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3. retro_mmus_392 79.90 99.52
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4. retro_mmus_548 66.67 65.87
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5. retro_mmus_559 93.30 100.00
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6. retro_mmus_596 79.85 63.94
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7. retro_mmus_646 89.42 100.00
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8. retro_mmus_876 79.02 97.60
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9. retro_mmus_1003 89.90 100.00
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10. retro_mmus_1067 81.82 67.79
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11. retro_mmus_1184 92.03 65.87
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12. retro_mmus_1694 94.27 92.31
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13. retro_mmus_1755 60.14 65.38
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14. retro_mmus_1796 83.48 55.29
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15. retro_mmus_2001 96.35 65.87
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16. retro_mmus_2002 95.62 65.38
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17. retro_mmus_2003 96.63 100.00
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18. retro_mmus_2031 61.26 51.92
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19. retro_mmus_2132 87.98 100.00
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20. retro_mmus_2173 89.16 79.33
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21. retro_mmus_2264 64.60 52.40
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22. retro_mmus_2732 78.97 91.83
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23. retro_mmus_2772 71.56 100.00
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24. retro_mmus_2847 75.00 53.37
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25. retro_mmus_2861 92.59 51.92
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26. retro_mmus_2956 82.35 65.38
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27. retro_mmus_2998 87.50 65.38
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28. retro_mmus_3018 71.17 52.40
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29. retro_mmus_3052 86.60 100.00
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30. retro_mmus_3057 100.00 66.35
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31. retro_mmus_3279 87.02 100.00
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32. retro_mmus_3307 57.80 51.92
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33. retro_mmus_3521 76.19 100.00
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Download FASTA sequences of all ENSMUSG00000047675 retrocopies