Parental gene:

RPS8, ENSACAG00000015697

Aliases:None
Description:40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:G1KRF8]
Organism:Anole lizard (Anolis carolinensis)
Coordinates:4:111055198..111061900(-)


>ENSACAG00000015697
ACAGGTATCTCCAGGGACAACTGGCACAAGCGCCGCAAAACTGGGGGGAAGCGTAAACCCTACCATAAGAAGAGGAAGTA
TGAGTTGGGGCGACCCCCTGCCAATACAAAAATTGGCCCCCGGAGGATTCACACAGTAAGGGTACGTGGTGGGAATAAAA
AATACCGTGCTCTGCGTCTGGATGTTGGAAACTTCTCTTGGGGATCTGAATGCTGCACTCGTAAAACCAGAATCATTGAT
GTAGTGTACAATGCCTCCAACAACGAACTGGTGCGCACAAAGACCCTGGTCAAAAACTGCATTGTCCTCATTGACAGCAC
ACCATACCGTCAGTGGTATGAAGCCCACTATGCATTACCCCTTGGCCGCAAAAAGGGTGCCAAGCTGACACCTGAGGAGG
AAGAAATCTTAAACAAAAAGCGTTCAAAGAAAATTCAGAAGAAGTATGATGAACGGAAAAAGAATGCTAAGATCAGTAGT
CTTCTGGAAGAGCAGTTCCAGCAAGGAAAGCTGCTTGCTTGCATTGCCTCCAGGCCTGGACAATGTGGCCGAGCAGATGG
CTACCTCCTAGAAGGCAAAGAACTCGAATTCTATCTGAGGAAGATCAAGGCCAGGAGAGGCAAATGA

Library Parental gene expression (RPM)
SRP009831_adrenal 2721 .79 RPM
SRP009831_brain 325 .84 RPM
SRP009831_dewlap 533 .83 RPM
SRP009831_embryo 1198 .93 RPM
SRP009831_heart 703 .42 RPM
SRP009831_liver 1393 .50 RPM
SRP009831_lung 603 .87 RPM
SRP009831_ovary 338 .90 RPM
SRP009831_skeletal_muscle 417 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000004745 ortholog_one2one 8 retrogenes
retro_cfam_1336, retro_cfam_1662, retro_cfam_1730, retro_cfam_2139, retro_cfam_2177, retro_cfam_261, retro_cfam_589, retro_cfam_791,
Choloepus hoffmanni ENSCHOG00000008785 ortholog_one2one 10 retrogenes
retro_chof_1197, retro_chof_1258, retro_chof_1466, retro_chof_1638, retro_chof_2066, retro_chof_2617, retro_chof_2633, retro_chof_274, retro_chof_331, retro_chof_951,
Callithrix jacchus ENSCJAG00000004197 ortholog_one2many 5 retrogenes
retro_cjac_1068, retro_cjac_181, retro_cjac_3138, retro_cjac_6, retro_cjac_951,
Dasypus novemcinctus ENSDNOG00000025236 ortholog_one2one 3 retrogenes
retro_dnov_1717, retro_dnov_802, retro_dnov_908,
Dipodomys ordii ENSDORG00000009287 ortholog_one2many 1 retrogene
retro_dord_429,
Echinops telfairi ENSETEG00000004002 ortholog_one2one 13 retrogenes
retro_etel_1000, retro_etel_1063, retro_etel_1201, retro_etel_147, retro_etel_1495, retro_etel_1733, retro_etel_1864, retro_etel_1941, retro_etel_2050, retro_etel_2060, retro_etel_302, retro_etel_368, retro_etel_395,
Felis catus ENSFCAG00000022996 ortholog_one2many 4 retrogenes
retro_fcat_1222, retro_fcat_200, retro_fcat_456, retro_fcat_962,
Homo sapiens ENSG00000142937 ortholog_one2one 8 retrogenes
retro_hsap_1467, retro_hsap_1536, retro_hsap_1942, retro_hsap_2034, retro_hsap_2791, retro_hsap_3158, retro_hsap_3410, retro_hsap_635,
Gorilla gorilla ENSGGOG00000005645 ortholog_one2many 5 retrogenes
retro_ggor_1127, retro_ggor_1170, retro_ggor_1357, retro_ggor_1465, retro_ggor_556,
Loxodonta africana ENSLAFG00000027596 ortholog_one2one 3 retrogenes
retro_lafr_531, retro_lafr_647, retro_lafr_904,
Microcebus murinus ENSMICG00000008024 ortholog_one2one 4 retrogenes
retro_mmur_1180, retro_mmur_1434, retro_mmur_1501, retro_mmur_380,
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
retro_mluc_1114, retro_mluc_1132, retro_mluc_1165, retro_mluc_1277, retro_mluc_1288, retro_mluc_1418, retro_mluc_1467, retro_mluc_1476, retro_mluc_1486, retro_mluc_1634, retro_mluc_1656, retro_mluc_1689, retro_mluc_1808, retro_mluc_1911, retro_mluc_1938, retro_mluc_2043, retro_mluc_2055, retro_mluc_2085, retro_mluc_2111, retro_mluc_2153, retro_mluc_2182, retro_mluc_2209, retro_mluc_2414, retro_mluc_460, retro_mluc_662, retro_mluc_730, retro_mluc_773, retro_mluc_820, retro_mluc_821, retro_mluc_906,
Macaca mulatta ENSMMUG00000015270 ortholog_one2many 2 retrogenes
retro_mmul_275, retro_mmul_70,
Monodelphis domestica ENSMODG00000028389 ortholog_one2one 1 retrogene
retro_mdom_998,
Mus musculus ENSMUSG00000047675 ortholog_one2one 33 retrogenes
retro_mmus_1003, retro_mmus_1067, retro_mmus_1184, retro_mmus_1694, retro_mmus_1755, retro_mmus_1796, retro_mmus_2001, retro_mmus_2002, retro_mmus_2003, retro_mmus_2031, retro_mmus_2132, retro_mmus_2173, retro_mmus_2264, retro_mmus_2732, retro_mmus_2772, retro_mmus_2847, retro_mmus_2861, retro_mmus_293, retro_mmus_2956, retro_mmus_2998, retro_mmus_3018, retro_mmus_3052, retro_mmus_3057, retro_mmus_3279, retro_mmus_3307, retro_mmus_3521, retro_mmus_364, retro_mmus_392, retro_mmus_548, retro_mmus_559, retro_mmus_596, retro_mmus_646, retro_mmus_876,
Nomascus leucogenys ENSNLEG00000014147 ortholog_one2many 1 retrogene
retro_nleu_34,
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
retro_ocun_168,
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
retro_ogar_1156, retro_ogar_1746, retro_ogar_1895, retro_ogar_2501, retro_ogar_2529, retro_ogar_2556, retro_ogar_2699, retro_ogar_2723, retro_ogar_2947, retro_ogar_308, retro_ogar_3291, retro_ogar_3436, retro_ogar_394, retro_ogar_521, retro_ogar_730, retro_ogar_805,
Pongo abelii ENSPPYG00000001426 ortholog_one2one 1 retrogene
retro_pabe_147,
Pan troglodytes ENSPTRG00000000659 ortholog_one2many 1 retrogene
retro_ptro_30,
Rattus norvegicus ENSRNOG00000018768 ortholog_one2many 2 retrogenes
retro_rnor_222, retro_rnor_235,
Sorex araneus ENSSARG00000000899 ortholog_one2one 1 retrogene
retro_sara_462,
Ictidomys tridecemlineatus ENSSTOG00000006322 ortholog_one2one 3 retrogenes
retro_itri_1337, retro_itri_1380, retro_itri_750,
Tursiops truncatus ENSTTRG00000003388 ortholog_one2one 4 retrogenes
retro_ttru_1839, retro_ttru_282, retro_ttru_300, retro_ttru_344,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_124 91.35 99.04
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Download FASTA sequences of all ENSACAG00000015697 retrocopies