Parental gene: | Snrpa, ENSMUSG00000061479 |
| Aliases: | Snrpa, C430021M15Rik, Rnu1a-1, Rnu1a1, U1-A, U1A |
| Description: | small nuclear ribonucleoprotein polypeptide A [Source:MGI Symbol;Acc:MGI:1855690] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 7:27187004..27196271(-) |
>ENSMUSG00000061479
ATGGCCACCATAGCCACCATGCCAGTTCCCGAGACCCGTGCCAACCACACTATTTATATCAACAATCTCAATGAGAAGAT
CAAGAAGGATGAGCTCAAGAAGTCCCTGTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTGTCTCGGA
TCATGAAGATGAGGGGCCAGGCCTTCGTCATCTTCAAGGAGGTCACCAGCGCCACCAATGCCCTGCGCTCCATGCAGGGC
TTCCCTTTCTACGACAAGCCCATGCGCATCCAGTACGCAAAGACTGACTCGGACATCATTGCCAAGATGAAGGGCACCTA
TGTGGAGAGAGATCGCAAACGAGAGAAGAGGAAGCCCAAGAGTCAGGAGACACCTGCTGCCAAAAAGGCTGTTCAGGGTG
GGGCAGCTGCGCCCGTGGTGGGGGCTGTCCAGCCCGTACCGGGCATGCCACCGATGCCTCAGGCACCCCGCATCATGCAC
CATATGCCAGGACAGCCTCCCTACATGCCGCCACCTGGCATGATCCCGCCACCAGGCCTCGCTCCTGGCCAGATCCCCCC
TGGGGCCATGCCCCCACAGCAGCTCATGCCTGGGCAGATGCCGCCTGCCCAGCCTCTCTCCGAGAACCCACCCAATCACA
TCCTGTTCCTCACCAACCTGCCTGAGGAGACCAACGAGCTCATGCTCTCCATGCTCTTCAACCAGTTCCCTGGCTTCAAG
GAGGTGCGTCTGGTCCCTGGGCGCCATGACATCGCCTTCGTGGAGTTTGACAATGAAGTGCAGGCTGGGGCAGCACGAGA
TGCCCTGCAAGGCTTTAAGATCACACAAAACAATGCTATGAAGATCTCTTTTGCCAAGAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 23 .99 RPM |
| SRP007412_cerebellum | 18 .58 RPM |
| SRP007412_heart | 15 .44 RPM |
| SRP007412_kidney | 13 .98 RPM |
| SRP007412_liver | 10 .16 RPM |
| SRP007412_testis | 29 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000005091 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014865 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000010875 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000000219 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007912 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000017681 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000008333 | within_species_paralog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002864 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000001494 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_275 | 91.55 | 74.22 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
| 2. | retro_mmus_469 | 87.46 | 99.30 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 3. | retro_mmus_888 | 90.88 | 99.30 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 4. | retro_mmus_889 | 91.29 | 99.30 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 5. | retro_mmus_958 | 91.58 | 99.30 | Please wait, loading |
Please wait, loading |
Please wait, loading |
| 6. | retro_mmus_3374 | 87.72 | 99.30 | Please wait, loading |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all ENSMUSG00000061479 retrocopies