RetrogeneDB ID: retro_mputfur_593

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896923.1:13759687..13760550(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000017270
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SNRPA
• Ensembl ID: ENSMPUG00000017681
• Aliases: None
• Description: small nuclear ribonucleoprotein polypeptide A [Source:HGNC Symbol;Acc:11151]

Sequence

>retro_mputfur_593
CTACCTCGGCACCTCTCCATGGCAGTTCCCGAGACCCGCCCCAACCACACTATTTATATCAACAATCTCAACGAGAAGAT
CAAGAAGGATGAGCTAAAGAAGTCCCTCTATGCCATCTTCTCCCAGTTTGGCCAGATCCTGGATATCCTGGTTTCCCGAA
GCCTGAAGATGAGGGGCCAGGCCTTTGTCATCTTCAAGGAGGTCAGCAGTGCCACCAACGCCCTGCGCTCCATGCAGGGT
TTCCCCTTCTACGACAAGCCCATGCGCATTCAGTATGCAAAGACTGACTCGGATATCATTGCTAAGATGAAGGGCACCTT
TGTGGAGCGGGACCGCAAGCGGGAGAAAAGGAAGCCCAAGAGCCAGGAAACCCCAGCAGCCAAGAAGGCCGTGCAGGGTG
GGGCAGCCACCCCTGTGGTGGGGGCTGTCCAGGGCCCTGTTCTGGGCATGCCCCCGATGACCCAGGCACCCCGCATCATG
CACCACATGCCCGGCCAGCCTCCCTACATACCGCCTCCGGGCAGATCCCGCCCCCAGGCCTGGCTCCCGGCCAGATCCCA
CCAGGGGCCCTGCCCCCACAGCAGCTTATGCCGGGCCAGATGCTGCCTGCCCAGCCTCTTTCAGAAAATCCACCAAATCA
CATCTTATTCCTCACCAACTTGCCCGAGGAGACCAACGAGCTCATGCTGTCCATGCTTTTCAACCAGTTCCCTGGCTTCA
AGGAGGTCCAACTGGTCCCTGGGCGGCACGACATTGCCTTTGTGGAGTTTGACAATGAGGTCCAGGCAGGGGCCGCTCGG
GACGCACTGCAGGGTTTCAAGATCACCCAGAACAATGCCATGAAGATCTCCTTTGCCAAGAAG

Alignment

ORF - retro_mputfur_593 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.92 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS
          LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS
Retrocopy LPRHLSMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS

Parental  ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVV
          ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVV
Retrocopy ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAATPVV

Parental  GAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPP-GMIPPPGLAPGQIPPGALPPQQLMPGQMPPAQPLSE
          GAVQGPV.GMPPMTQAPRIMHHMPGQPPY.PPP.G.IPPPGLAPGQIPPGALPPQQLMPGQM.PAQPLSE
Retrocopy GAVQGPVLGMPPMTQAPRIMHHMPGQPPYIPPP<GQIPPPGLAPGQIPPGALPPQQLMPGQMLPAQPLSE

Parental  NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNN
          NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV.LVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNN
Retrocopy NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVQLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNN

Parental  AMKISFAKK
          AMKISFAKK
Retrocopy AMKISFAKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_593 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_593 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005091	1 retrocopy	retro_cfam_1114,
Callithrix jacchus	ENSCJAG00000014865	1 retrocopy	retro_cjac_287,
Cavia porcellus	ENSCPOG00000010875	1 retrocopy	retro_cpor_663,
Myotis lucifugus	ENSMLUG00000000219	1 retrocopy	retro_mluc_1517,
Monodelphis domestica	ENSMODG00000007912	1 retrocopy	retro_mdom_447,
Mustela putorius furo	ENSMPUG00000017681	1 retrocopy	retro_mputfur_593 ,
Mus musculus	ENSMUSG00000061479	6 retrocopies	retro_mmus_275, retro_mmus_3374, retro_mmus_469, retro_mmus_888, retro_mmus_889, retro_mmus_958,
Otolemur garnettii	ENSOGAG00000002864	1 retrocopy	retro_ogar_2046,
Pteropus vampyrus	ENSPVAG00000001494	1 retrocopy	retro_pvam_832,