Parental gene: | TPM3, ENSNLEG00000010990 |
| Aliases: | None |
| Description: | tropomyosin 3 [Source:HGNC Symbol;Acc:12012] |
| Organism: | Gibbon (Nomascus leucogenys) |
| Coordinates: | GL397275.1:4892300..4922330(-) |
>ENSNLEG00000010990
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGGAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCG
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAAAAGATGGAACT
CCAAGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAAGGAGACCTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATTAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAAATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGATTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCAC
GCCCTCAATGACATGACCTCTATATAA
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGGAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCG
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAAAAGATGGAACT
CCAAGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAAGGAGACCTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATTAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAAATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGATTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCAC
GCCCTCAATGACATGACCTCTATATAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000009747 | possible_ortholog | 9 retrogenes | |
| Gorilla gorilla | ENSGGOG00000012668 | possible_ortholog | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005413 | within_species_paralog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000025133 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000787 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017441 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000006556 | possible_ortholog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023525 | possible_ortholog | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_nleu_921 | 78.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_nleu_922 | 77.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_nleu_1133 | 84.65 | 91.94 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_nleu_2050 | 69.63 | 54.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_nleu_2119 | 76.03 | 58.06 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_nleu_2141 | 75.40 | 50.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_nleu_2387 | 92.73 | 66.53 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_nleu_2523 | 73.19 | 55.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSNLEG00000010990 retrocopies