Parental gene:

Tpm3, ENSRNOG00000017441

Aliases:Tpm3, TM30nm, Tpm5
Description:Tropomyosin alpha-3 chain [Source:UniProtKB/Swiss-Prot;Acc:Q63610]
Organism:Rat (Rattus norvegicus)
Coordinates:2:208863072..208884376(+)


>ENSRNOG00000017441
ATGGCCGGGAGCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCTGATGATGCGGAGGAGAG
GGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCTGAAGCTGAGGTGGCCTCCTTGAACC
GCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCCCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCG
GAGAAGGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAACCGGGCTCTAAAAGATGAAGAAAAGATGGAGCT
CCAGGAAATCCAGCTGAAGGAAGCAAAGCACATTGCAGAAGAGGCAGACAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGCGCCGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAGTATGAAGA
AGAAATAAAGATTCTTACTGATAAACTCAAGGAGGCGGAGACCCGGGCTGAGTTTGCTGAAAGATCGGTAGCCAAACTGG
AAAAGACCATTGATGACTTGGAAGATAAGCTGAAGTGCACCAAAGAGGAGCATCTCTGTACACAAAGGATGCTGGACCAG
ACCCTGCTGGACCTGAACGAGATGTAG

Library Parental gene expression (RPM)
SRP017611_brain 108 .28 RPM
SRP017611_kidney 113 .47 RPM
SRP017611_liver 46 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009747 ortholog_one2many 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Gorilla gorilla ENSGGOG00000012668 ortholog_one2many 3 retrogenes
retro_ggor_1239, retro_ggor_1817, retro_ggor_2621,
Nomascus leucogenys ENSNLEG00000010990 possible_ortholog 8 retrogenes
retro_nleu_1133, retro_nleu_2050, retro_nleu_2119, retro_nleu_2141, retro_nleu_2387, retro_nleu_2523, retro_nleu_921, retro_nleu_922,
Pongo abelii ENSPPYG00000000787 possible_ortholog 2 retrogenes
retro_pabe_1230, retro_pabe_3263,
Rattus norvegicus ENSRNOG00000016731 within_species_paralog 1 retrogene
retro_rnor_1520,
Rattus norvegicus ENSRNOG00000018184 within_species_paralog 1 retrogene
retro_rnor_734,
Sus scrofa ENSSSCG00000006556 ortholog_one2many 3 retrogenes
retro_sscr_318, retro_sscr_604, retro_sscr_781,
Ictidomys tridecemlineatus ENSSTOG00000023525 possible_ortholog 6 retrogenes
retro_itri_1453, retro_itri_1558, retro_itri_1837, retro_itri_231, retro_itri_674, retro_itri_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1524 71.94 53.23
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Download FASTA sequences of all ENSRNOG00000017441 retrocopies