Parental gene:

TPM3, ENSSSCG00000006556

Aliases:None
Description:Sus scrofa tropomyosin 3 (TPM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001001632]
Organism:Pig (Sus scrofa)
Coordinates:4:104466975..104489463(+)


>ENSSSCG00000006556
ATGGCTGGAATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCCGATGATGCAGAGGAGAG
GGCCGAGCGCCTCCAGCGGGAAGTGGAGGGGGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGCGCTCAAGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAGGAAGCT
GAGAAAGCTGCTGATGAGAGCGAGAGAGGTATGAAGGTCATTGAAAACCGAGCCTTAAAAGATGAGGAAAAAATGGAACT
CCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAGGGAGACTTGGAACGCACAGAGGAGCGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATCAGACTGATGGACCAGAATCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAGATAAAGATTCTCACTGACAAACTCAAGGAGGCAGAGACCCGGGCCGAGTTTGCCGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAG
ACTCTGCTCGACCTGAATGAGATGTAG

Library Parental gene expression (RPM)
SRP014902_placenta 213 .70 RPM
SRP014902_testis 111 .18 RPM
SRP018288_heart 41 .78 RPM
SRP018288_kidney 134 .07 RPM
SRP018288_liver 67 .00 RPM
SRP018288_lung 401 .40 RPM
SRP018856_adipose 186 .50 RPM
SRP035408_brain 330 .82 RPM
SRP035408_liver 226 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009747 ortholog_many2many 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Gorilla gorilla ENSGGOG00000012668 ortholog_many2many 3 retrogenes
retro_ggor_1239, retro_ggor_1817, retro_ggor_2621,
Nomascus leucogenys ENSNLEG00000010990 possible_ortholog 8 retrogenes
retro_nleu_1133, retro_nleu_2050, retro_nleu_2119, retro_nleu_2141, retro_nleu_2387, retro_nleu_2523, retro_nleu_921, retro_nleu_922,
Pongo abelii ENSPPYG00000000787 possible_ortholog 2 retrogenes
retro_pabe_1230, retro_pabe_3263,
Rattus norvegicus ENSRNOG00000017441 ortholog_one2many 1 retrogene
retro_rnor_1524,
Ictidomys tridecemlineatus ENSSTOG00000023525 possible_ortholog 6 retrogenes
retro_itri_1453, retro_itri_1558, retro_itri_1837, retro_itri_231, retro_itri_674, retro_itri_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_318 88.02 77.42
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2. retro_sscr_604 60.48 65.73
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3. retro_sscr_781 64.22 86.29
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Download FASTA sequences of all ENSSSCG00000006556 retrocopies