Parental gene: | ENSCJAG00000009747 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:8096566..8132143(-) |
>ENSCJAG00000009747
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGAGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCT
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAGAAGATGGAACT
CCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATCATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAGATCAAGATTCTTACTGACAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAG
ACTCTGCTTGACCTGAATGAGATGTAG
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGAGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCT
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAGAAGATGGAACT
CCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATCATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAGATCAAGATTCTTACTGACAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAG
ACTCTGCTTGACCTGAATGAGATGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 93 .74 RPM |
| SRP051959_skeletal_muscle | 20 .29 RPM |
| SRP051959_lymph_node | 96 .96 RPM |
| SRP051959_lung | 91 .80 RPM |
| SRP051959_liver | 34 .29 RPM |
| SRP051959_kidney | 33 .86 RPM |
| SRP051959_heart | 20 .50 RPM |
| SRP051959_colon | 68 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000004355 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000009627 | within_species_paralog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000014135 | within_species_paralog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012668 | ortholog_many2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000010990 | possible_ortholog | 8 retrogenes | |
| Pongo abelii | ENSPPYG00000000787 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017441 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000006556 | ortholog_many2many | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000023525 | possible_ortholog | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_527 | 92.74 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_785 | 81.01 | 63.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_798 | 66.26 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1232 | 74.73 | 73.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1509 | 72.22 | 57.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1580 | 93.40 | 85.08 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_1910 | 97.80 | 73.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2476 | 97.98 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3121 | 80.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000009747 retrocopies