Parental gene:

ENSOPRG00000004728

Aliases:None
Description:None
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_4523:253790..255014(-)


>ENSOPRG00000004728
ATGGGTCGCGTTCGCACCAAAACCGTGAAGAAGGCGGCGCGGGTCATCATTGAGAAGTACTACACCCGGCTGGGCAACGA
CTTCCACACCAACAAGCGCGTGTGTGAGGAAATCGCCATCATCCCCAGCAAGAAGCTCCGCAACAAGATCGCGGGCTATG
TCACGCACCTGATGAAGCGCATCCAGCGAGGCCCCGTGAGAGGCATCTCCATCAAGCTGCAGGAGGAGGAGAGGGAGCGG
AGAGATAACTACGTCCCCGAGGTCTCGGCCCTGGATCAGGAGATCATCGAAGTGGACCCTGACACCAAGGAGATGCTGAA
GCTTCTG

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013053 ortholog_one2one 9 retrogenes
retro_cfam_1032, retro_cfam_1234, retro_cfam_1680, retro_cfam_1707, retro_cfam_217, retro_cfam_240, retro_cfam_307, retro_cfam_491, retro_cfam_82,
Equus caballus ENSECAG00000024902 possible_ortholog 1 retrogene
retro_ecab_92,
Felis catus ENSFCAG00000002358 possible_ortholog 7 retrogenes
retro_fcat_1060, retro_fcat_1354, retro_fcat_1419, retro_fcat_1549, retro_fcat_288, retro_fcat_436, retro_fcat_710,
Homo sapiens ENSG00000182774 possible_ortholog 11 retrogenes
retro_hsap_1516, retro_hsap_1743, retro_hsap_2150, retro_hsap_2702, retro_hsap_3172, retro_hsap_3477, retro_hsap_3570, retro_hsap_3588, retro_hsap_3719, retro_hsap_464, retro_hsap_925,
Homo sapiens ENSG00000184779 possible_ortholog 5 retrogenes
retro_hsap_2559, retro_hsap_2854, retro_hsap_3233, retro_hsap_3909, retro_hsap_4110,
Loxodonta africana ENSLAFG00000031717 possible_ortholog 5 retrogenes
retro_lafr_1105, retro_lafr_1204, retro_lafr_359, retro_lafr_573, retro_lafr_634,
Myotis lucifugus ENSMLUG00000022830 possible_ortholog 3 retrogenes
retro_mluc_1202, retro_mluc_1347, retro_mluc_1949,
Macaca mulatta ENSMMUG00000011327 possible_ortholog 6 retrogenes
retro_mmul_116, retro_mmul_194, retro_mmul_200, retro_mmul_266, retro_mmul_67, retro_mmul_99,
Mustela putorius furo ENSMPUG00000015571 possible_ortholog 5 retrogenes
retro_mputfur_218, retro_mputfur_388, retro_mputfur_476, retro_mputfur_57, retro_mputfur_681,
Oryctolagus cuniculus ENSOCUG00000006370 possible_ortholog 1 retrogene
retro_ocun_90,
Otolemur garnettii ENSOGAG00000024107 possible_ortholog 16 retrogenes
retro_ogar_1342, retro_ogar_14, retro_ogar_1632, retro_ogar_174, retro_ogar_1902, retro_ogar_2146, retro_ogar_2221, retro_ogar_2392, retro_ogar_2547, retro_ogar_2686, retro_ogar_2744, retro_ogar_3059, retro_ogar_439, retro_ogar_579, retro_ogar_647, retro_ogar_752,
Procavia capensis ENSPCAG00000006035 ortholog_one2one 3 retrogenes
retro_pcap_164, retro_pcap_439, retro_pcap_72,
Pongo abelii ENSPPYG00000006888 possible_ortholog 3 retrogenes
retro_pabe_108, retro_pabe_194, retro_pabe_72,
Rattus norvegicus ENSRNOG00000019106 possible_ortholog 6 retrogenes
retro_rnor_19, retro_rnor_23, retro_rnor_276, retro_rnor_285, retro_rnor_289, retro_rnor_84,
Sus scrofa ENSSSCG00000027358 possible_ortholog 2 retrogenes
retro_sscr_408, retro_sscr_91,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_27 87.27 100.00
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2. retro_opri_108 62.14 92.66
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3. retro_opri_189 58.82 60.55
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4. retro_opri_616 87.27 100.00
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5. retro_opri_802 58.82 60.55
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6. retro_opri_901 62.14 92.66
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7. retro_opri_926 64.86 65.14
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Download FASTA sequences of all ENSOPRG00000004728 retrocopies