RetrogeneDB ID: | retro_cfam_491 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:41405417..41405732(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSCAFG00000013053 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S17 (RPS17), mRNA. [Source:RefSeq mRNA;Acc:NM_001003099] |
Percent Identity: | 61.9 % |
Parental protein coverage: | 61.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS |
MG...TKT.KK.ARV..EKY.T.LG.DF.TN.....EI..IP.KKL..KI.GYV..LM...QRG.V.GI. | |
Retrocopy | MGCICTKTMKKVARVLTEKYHTHLGSDFYTNNPLYGEIITIPNKKLCSKIGGYVKYLMGWNQRGLVMGIC |
Parental | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEM |
IKLQ.EER.RR.NYV.EVSALD.EIIE.DP...E. | |
Retrocopy | IKLQKEERKRRVNYVSEVSALD*EIIEIDPEALEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 232 .34 RPM |
SRP017611_brain | 0 .00 RPM | 76 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 629 .86 RPM |
SRP017611_liver | 0 .00 RPM | 150 .39 RPM |