RetrogeneDB ID: | retro_cfam_1707 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 4:62880248..62880639(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSCAFG00000013053 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S17 (RPS17), mRNA. [Source:RefSeq mRNA;Acc:NM_001003099] |
Percent Identity: | 50.36 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | RVRTKTVKKAARV-IIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI-AGYVTHLMKRIQRGPVRGIS |
R..TKTV...A.......Y...L.N.F..NK..C.EI.I.PS.....KI..G.VT...K..Q.G..R.I. | |
Retrocopy | RIHTKTV**TACI<LQDMYHMCLCNNFQVNKHTCKEIIIVPS*NVQKKI>TGCVTP-KKDVQSGLMRIIP |
Parental | IKLQEEERERRDNYVPE-VSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGM-NFKTPRGAV |
I.LQ..E.E...NYVPE.VSAL..EII..D.DTKEM.K.L.F..LSNLQ.TQP..GM..F.TP.GA. | |
Retrocopy | ILLQKKEGEK-ENYVPE<VSALV*EII*ADSDTKEMPKHLNFSGLSNLQLTQPIAGM<DFRTPYGAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 232 .34 RPM |
SRP017611_brain | 0 .00 RPM | 76 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 629 .86 RPM |
SRP017611_liver | 0 .00 RPM | 150 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3172 |