RetrogeneDB ID: | retro_pabe_72 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 18:75296457..75296862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000009207 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSPPYG00000006888 | ||
Aliases: | None | ||
Description: | ribosomal protein S17 [Source:HGNC Symbol;Acc:10397] |
Percent Identity: | 97.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS |
MGR..TKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS | |
Retrocopy | MGRICTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS |
Parental | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGPV |
IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFK.P.GPV | |
Retrocopy | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKMPQGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 34 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .46 RPM |
SRP007412_heart | 0 .06 RPM | 31 .70 RPM |
SRP007412_kidney | 0 .07 RPM | 75 .31 RPM |
SRP007412_liver | 0 .00 RPM | 62 .89 RPM |