Parental gene:

Rps17, ENSRNOG00000019106

Aliases:None
Description:40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P04644]
Organism:Rat (Rattus norvegicus)
Coordinates:1:144109689..144112274(-)


>ENSRNOG00000019106
ATGGGCCGCGTTCGCACCAAGACTGTGAAGAAGGCGGCCCGGGTCATCATCGAGAAGTACTACACGCGCCTGGGTAATGA
CTTTCACACCAACAAGCGCGTGTGCGAGGAGATCGCCATCATCCCCAGCAAAAACCTTCGGAACAAGATAGCCGGCTATG
TCACGCATCTGATGAAGCGGATTCAGAGAGGTCCTGTGAGAGGCATCTCCATCAAGTTGCAGGAAGAAGAGAGGGAGAGG
AGAGATAATTATGTTCCTGAGGTCTCAGCCCTAGATCAGGAGATCATTGAGGTAGATCCTGACACCAAGGAAATGCTGAA
GCTTCTGGACTTTGGCAGTCTCTCCAACCTCCAGGTCACTCAGCCTACGGTTGGGATGAATTTCAAAACACCACGTGGAG
CTGTTTAA

Library Parental gene expression (RPM)
SRP017611_brain 28 .76 RPM
SRP017611_kidney 61 .41 RPM
SRP017611_liver 37 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000012225 ortholog_one2many 4 retrogenes
retro_acar_128, retro_acar_154, retro_acar_177, retro_acar_81,
Ailuropoda melanoleuca ENSAMEG00000014122 ortholog_one2many 5 retrogenes
retro_amel_1571, retro_amel_1662, retro_amel_179, retro_amel_431, retro_amel_492,
Bos taurus ENSBTAG00000000622 ortholog_one2many 4 retrogenes
retro_btau_1014, retro_btau_568, retro_btau_731, retro_btau_884,
Canis familiaris ENSCAFG00000013053 possible_ortholog 9 retrogenes
retro_cfam_1032, retro_cfam_1234, retro_cfam_1680, retro_cfam_1707, retro_cfam_217, retro_cfam_240, retro_cfam_307, retro_cfam_491, retro_cfam_82,
Cavia porcellus ENSCPOG00000014693 ortholog_one2many 3 retrogenes
retro_cpor_1472, retro_cpor_246, retro_cpor_440,
Dasypus novemcinctus ENSDNOG00000012633 ortholog_one2many 6 retrogenes
retro_dnov_1183, retro_dnov_1296, retro_dnov_2140, retro_dnov_2636, retro_dnov_416, retro_dnov_673,
Equus caballus ENSECAG00000024902 ortholog_many2many 1 retrogene
retro_ecab_92,
Echinops telfairi ENSETEG00000008035 ortholog_one2many 10 retrogenes
retro_etel_1279, retro_etel_1375, retro_etel_1501, retro_etel_1658, retro_etel_1950, retro_etel_592, retro_etel_619, retro_etel_673, retro_etel_851, retro_etel_984,
Felis catus ENSFCAG00000002358 ortholog_one2many 7 retrogenes
retro_fcat_1060, retro_fcat_1354, retro_fcat_1419, retro_fcat_1549, retro_fcat_288, retro_fcat_436, retro_fcat_710,
Homo sapiens ENSG00000182774 possible_ortholog 11 retrogenes
retro_hsap_1516, retro_hsap_1743, retro_hsap_2150, retro_hsap_2702, retro_hsap_3172, retro_hsap_3477, retro_hsap_3570, retro_hsap_3588, retro_hsap_3719, retro_hsap_464, retro_hsap_925,
Homo sapiens ENSG00000184779 possible_ortholog 5 retrogenes
retro_hsap_2559, retro_hsap_2854, retro_hsap_3233, retro_hsap_3909, retro_hsap_4110,
Loxodonta africana ENSLAFG00000031717 ortholog_one2many 5 retrogenes
retro_lafr_1105, retro_lafr_1204, retro_lafr_359, retro_lafr_573, retro_lafr_634,
Myotis lucifugus ENSMLUG00000022830 possible_ortholog 3 retrogenes
retro_mluc_1202, retro_mluc_1347, retro_mluc_1949,
Macaca mulatta ENSMMUG00000011327 possible_ortholog 6 retrogenes
retro_mmul_116, retro_mmul_194, retro_mmul_200, retro_mmul_266, retro_mmul_67, retro_mmul_99,
Monodelphis domestica ENSMODG00000002011 ortholog_one2many 9 retrogenes
retro_mdom_1482, retro_mdom_1923, retro_mdom_1928, retro_mdom_330, retro_mdom_342, retro_mdom_422, retro_mdom_425, retro_mdom_645, retro_mdom_762,
Mustela putorius furo ENSMPUG00000015571 ortholog_one2many 5 retrogenes
retro_mputfur_218, retro_mputfur_388, retro_mputfur_476, retro_mputfur_57, retro_mputfur_681,
Mus musculus ENSMUSG00000061787 ortholog_one2many 12 retrogenes
retro_mmus_1095, retro_mmus_1396, retro_mmus_1630, retro_mmus_2457, retro_mmus_2805, retro_mmus_2852, retro_mmus_3382, retro_mmus_3608, retro_mmus_549, retro_mmus_697, retro_mmus_909, retro_mmus_972,
Oryctolagus cuniculus ENSOCUG00000006370 ortholog_many2many 1 retrogene
retro_ocun_90,
Otolemur garnettii ENSOGAG00000024107 ortholog_one2many 16 retrogenes
retro_ogar_1342, retro_ogar_14, retro_ogar_1632, retro_ogar_174, retro_ogar_1902, retro_ogar_2146, retro_ogar_2221, retro_ogar_2392, retro_ogar_2547, retro_ogar_2686, retro_ogar_2744, retro_ogar_3059, retro_ogar_439, retro_ogar_579, retro_ogar_647, retro_ogar_752,
Ochotona princeps ENSOPRG00000004728 possible_ortholog 7 retrogenes
retro_opri_108, retro_opri_189, retro_opri_27, retro_opri_616, retro_opri_802, retro_opri_901, retro_opri_926,
Procavia capensis ENSPCAG00000006035 possible_ortholog 3 retrogenes
retro_pcap_164, retro_pcap_439, retro_pcap_72,
Pongo abelii ENSPPYG00000006888 possible_ortholog 3 retrogenes
retro_pabe_108, retro_pabe_194, retro_pabe_72,
Pteropus vampyrus ENSPVAG00000012022 ortholog_one2many 8 retrogenes
retro_pvam_1172, retro_pvam_1263, retro_pvam_332, retro_pvam_411, retro_pvam_413, retro_pvam_603, retro_pvam_739, retro_pvam_823,
Sorex araneus ENSSARG00000013001 ortholog_one2many 2 retrogenes
retro_sara_246, retro_sara_388,
Sarcophilus harrisii ENSSHAG00000014004 possible_ortholog 10 retrogenes
retro_shar_174, retro_shar_203, retro_shar_230, retro_shar_312, retro_shar_326, retro_shar_376, retro_shar_392, retro_shar_500, retro_shar_647, retro_shar_702,
Sus scrofa ENSSSCG00000027358 ortholog_one2many 2 retrogenes
retro_sscr_408, retro_sscr_91,
Ictidomys tridecemlineatus ENSSTOG00000006298 ortholog_one2many 2 retrogenes
retro_itri_769, retro_itri_841,
Tursiops truncatus ENSTTRG00000013011 ortholog_one2many 2 retrogenes
retro_ttru_1467, retro_ttru_683,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_19 88.15 100.00
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2. retro_rnor_23 100.00 100.00
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3. retro_rnor_84 94.07 100.00
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4. retro_rnor_276 99.26 100.00
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5. retro_rnor_285 94.81 100.00
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6. retro_rnor_289 84.33 99.26
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Download FASTA sequences of all ENSRNOG00000019106 retrocopies