Parental gene: | RPLP2, ENSPPYG00000002885 |
| Aliases: | None |
| Description: | ribosomal protein, large, P2 [Source:HGNC Symbol;Acc:10377] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:605019..608154(+) |
>ENSPPYG00000002885
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAGGGGGCAACTCCTCCCCCAGCGCTAAGGACATCAAGAAGATCTT
GGACAGCGTGGGCATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGTGAGCTGAATGGAAAAAACATTGAAGACG
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCCGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCA
GCCCCTGCTGCTGGTTCGGCCCCTGCTGCAGTAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGA
TGACATGGGATTTGGCCTTTTTGATTAA
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAGGGGGCAACTCCTCCCCCAGCGCTAAGGACATCAAGAAGATCTT
GGACAGCGTGGGCATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGTGAGCTGAATGGAAAAAACATTGAAGACG
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCCGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCA
GCCCCTGCTGCTGGTTCGGCCCCTGCTGCAGTAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGA
TGACATGGGATTTGGCCTTTTTGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 54 .30 RPM |
| SRP007412_cerebellum | 26 .51 RPM |
| SRP007412_heart | 33 .99 RPM |
| SRP007412_kidney | 98 .84 RPM |
| SRP007412_liver | 85 .23 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001777 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009523 | possible_ortholog | 1 retrogene | |
| Ciona intestinalis | ENSCING00000000626 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000016458 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000008417 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000177600 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010789 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000025508 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000026860 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016296 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000003137 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002116 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000001056 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012842 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_732 | 92.17 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_830 | 64.89 | 80.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1537 | 77.68 | 96.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1543 | 80.36 | 96.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2789 | 85.34 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2844 | 71.57 | 87.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000002885 retrocopies