Parental gene:

PSMB3, ENSPPYG00000008505

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540]
Organism:Orangutan (Pongo abelii)
Coordinates:17:50686612..50699397(-)


>ENSPPYG00000008505
ATGTCTATTATGTCCTATAACGGAGGGGCCGTCATGGCCATGAAGGGGAAGAACTGTGTGGCCATCGCTGCAGACAGGCG
CTTCGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGTGACCGGCTGTACATCGGTCTGG
CCGGGCTCGCCACTGACGTCCAGACAGTTGCCCAGCGCCTCAAGTTCCGGCTGAACCTGTATGAGTTGAAGGAAGGTCGG
CAGATCAAACCTTATACCCTCATGAGCCTGGTGGCCAACCTCTTGTATGAGAAACGGTTTGGCCCCTACTACACTGAGCC
AGTCATTGCCGGGTTGGACCCGAAGACCTTTAAGCCCTTCATTTGCTCTCTAGACCTCATCGGGTGCCCCATGGTGACTG
ACGACTTTGTGGTCAGTGGCACCTGCGCCGAACAAATGTACGGAATGTGTGAGTCCCTCTGGGAGCCCAACATGGATCCG
GAACACCTGTTTGAAACCATCTCCCAAGCCATGCTGAATGCTGTGGACCGGGATGCAGTGTCAGGCATGGGAGTCATTGT
CCACATCATCGAGAAGGACAAAATCACCACCAGGACACTGAAGGCCCGAATTGGACTAACCCTGTTTCCCAGAGCCCACT
TTTTTTTCTTTTTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 21 .40 RPM
SRP007412_cerebellum 19 .58 RPM
SRP007412_heart 28 .81 RPM
SRP007412_kidney 39 .54 RPM
SRP007412_liver 46 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016587 possible_ortholog 2 retrogenes
retro_cfam_135, retro_cfam_532,
Callithrix jacchus ENSCJAG00000008246 ortholog_one2one 1 retrogene
retro_cjac_2852,
Equus caballus ENSECAG00000000987 ortholog_one2one 1 retrogene
retro_ecab_476,
Erinaceus europaeus ENSEEUG00000015275 possible_ortholog 1 retrogene
retro_eeur_10,
Loxodonta africana ENSLAFG00000002233 ortholog_one2one 1 retrogene
retro_lafr_70,
Macropus eugenii ENSMEUG00000004131 ortholog_one2one 2 retrogenes
retro_meug_1804, retro_meug_551,
Microcebus murinus ENSMICG00000002997 ortholog_one2one 1 retrogene
retro_mmur_397,
Macaca mulatta ENSMMUG00000012363 possible_ortholog 1 retrogene
retro_mmul_868,
Monodelphis domestica ENSMODG00000012614 ortholog_one2one 2 retrogenes
retro_mdom_1722, retro_mdom_1812,
Mus musculus ENSMUSG00000069744 possible_ortholog 8 retrogenes
retro_mmus_1449, retro_mmus_1551, retro_mmus_1790, retro_mmus_1938, retro_mmus_2110, retro_mmus_41, retro_mmus_46, retro_mmus_536,
Oryctolagus cuniculus ENSOCUG00000002598 ortholog_one2one 1 retrogene
retro_ocun_561,
Pteropus vampyrus ENSPVAG00000002270 ortholog_one2one 1 retrogene
retro_pvam_822,
Rattus norvegicus ENSRNOG00000012938 possible_ortholog 7 retrogenes
retro_rnor_1016, retro_rnor_2094, retro_rnor_2448, retro_rnor_2537, retro_rnor_2804, retro_rnor_743, retro_rnor_8,
Ictidomys tridecemlineatus ENSSTOG00000014258 ortholog_one2one 3 retrogenes
retro_itri_527, retro_itri_935, retro_itri_936,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_927 78.90 97.71
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2. retro_pabe_2153 83.89 96.33
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Download FASTA sequences of all ENSPPYG00000008505 retrocopies