Parental gene:

PSMB3, ENSCJAG00000008246

Aliases:None
Description:Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:F7GPT9]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:110624363..110638071(+)


>ENSCJAG00000008246
TCTATTATGTCCTATAACGGAGGGGCCGTTATGGCCATGAAGGGGAAGAATTGTGTGGCCATCGCTGCAGACAGGCGCTT
CGGGATCCAGGCCCAGATGGTGACCACGGACTTCCAGAAGATCTTTCCCATGGGTGACCGGCTGTACATCGGTCTGGCCG
GGCTCGCCACTGACGTCCAGACAGTTGCCCAGCGCCTCAAGTTCCGTCTGAACCTGTATGAATTGAAGGAAGGTCGGCAG
ATCAAACCTTATACCCTCATGAGCATGGTGGCCAACCTCCTGTATGAGAAACGAGTTTGGCCCTACTACACTGAGCCAGT
CATTGCTGGGTGGGATCCGAAATTAAAGCCTTTCATTTGCTCTCTGAACCTCATTGGCTGCCCCATGGGGACTGATGACT
ATGTGGTCAGTGGCACCTGGTGTACAATGTATGGAATGTGCCAATCCCTCTGGGAAGCCACATTGGATCCAGAACACCTG
TTTGAAACCATCTCCCAAGCCATGCTGAATGCTGTGGACCGGGATGCAGTGTCGGGCATGGGAGTCATTGTCCACATCAT
TGAAAACCAGAATTTACCCACCAAGGTTCTTTTATGTTCTTTGGGGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 9 .05 RPM
SRP051959_skeletal_muscle 14 .24 RPM
SRP051959_lymph_node 10 .02 RPM
SRP051959_lung 7 .73 RPM
SRP051959_liver 15 .01 RPM
SRP051959_kidney 13 .60 RPM
SRP051959_heart 10 .61 RPM
SRP051959_colon 11 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000016587 possible_ortholog 2 retrogenes
retro_cfam_135, retro_cfam_532,
Equus caballus ENSECAG00000000987 ortholog_one2one 1 retrogene
retro_ecab_476,
Erinaceus europaeus ENSEEUG00000015275 possible_ortholog 1 retrogene
retro_eeur_10,
Homo sapiens ENSG00000108294 ortholog_one2one 2 retrogenes
retro_hsap_1121, retro_hsap_2387,
Gorilla gorilla ENSGGOG00000007067 ortholog_one2one 2 retrogenes
retro_ggor_103, retro_ggor_876,
Loxodonta africana ENSLAFG00000002233 ortholog_one2one 1 retrogene
retro_lafr_70,
Macropus eugenii ENSMEUG00000004131 ortholog_one2one 2 retrogenes
retro_meug_1804, retro_meug_551,
Microcebus murinus ENSMICG00000002997 ortholog_one2one 1 retrogene
retro_mmur_397,
Macaca mulatta ENSMMUG00000012363 ortholog_one2many 1 retrogene
retro_mmul_868,
Monodelphis domestica ENSMODG00000012614 ortholog_one2one 2 retrogenes
retro_mdom_1722, retro_mdom_1812,
Mus musculus ENSMUSG00000069744 possible_ortholog 8 retrogenes
retro_mmus_1449, retro_mmus_1551, retro_mmus_1790, retro_mmus_1938, retro_mmus_2110, retro_mmus_41, retro_mmus_46, retro_mmus_536,
Nomascus leucogenys ENSNLEG00000000594 ortholog_one2one 3 retrogenes
retro_nleu_1511, retro_nleu_188, retro_nleu_371,
Oryctolagus cuniculus ENSOCUG00000002598 ortholog_one2one 1 retrogene
retro_ocun_561,
Pongo abelii ENSPPYG00000008505 ortholog_one2one 2 retrogenes
retro_pabe_2153, retro_pabe_927,
Pteropus vampyrus ENSPVAG00000002270 ortholog_one2one 1 retrogene
retro_pvam_822,
Rattus norvegicus ENSRNOG00000012938 possible_ortholog 7 retrogenes
retro_rnor_1016, retro_rnor_2094, retro_rnor_2448, retro_rnor_2537, retro_rnor_2804, retro_rnor_743, retro_rnor_8,
Ictidomys tridecemlineatus ENSSTOG00000014258 ortholog_one2one 3 retrogenes
retro_itri_527, retro_itri_935, retro_itri_936,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2852 75.65 94.06
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Download FASTA sequences of all ENSCJAG00000008246 retrocopies