RetrogeneDB ID: | retro_meug_551 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold135195:951..1447(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSMEUG00000004131 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540] |
Percent Identity: | 76.79 % |
Parental protein coverage: | 80.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QKIFPMGDRLYIGLAGLATDVQ-TVAQRLKFRLNLYEL-KEGRQIKPYTLMSMVANLLYEKRFGPYYTEP |
.KIFP.GDRLYIGLAGL.T.V..T..Q.LKF.LNLYEL.KEG..IKP..LMSMV.N.LYEKRFG.Y.T.. | |
Retrocopy | RKIFPIGDRLYIGLAGLTTNVR<TIPQHLKF*LNLYEL<KEG*HIKPCALMSMVVNFLYEKRFGLYCTDT |
Parental | VIAGLHPKTFEPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDR |
V.AGL.PKTFEPFICSLDLIGCPMVTDDFVVSGTC.EQM.GMCESLWEPDMEP.HL.ETISQ..LN.VD. | |
Retrocopy | VMAGLQPKTFEPFICSLDLIGCPMVTDDFVVSGTCLEQMNGMCESLWEPDMEPKHLSETISQTRLNVVDQ |
Parental | DAVSGMGVIVHIIEKDKITTRTLKARMD |
...SGM.VIVHIIEK.KITT.TLK..MD | |
Retrocopy | VFLSGMRVIVHIIEKEKITTQTLKTQMD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |