RetrogeneDB ID: | retro_ecab_476 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 19:48221207..48221645(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB3 | ||
Ensembl ID: | ENSECAG00000000987 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540] |
Percent Identity: | 67.79 % |
Parental protein coverage: | 73.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPQTLMSMVANLLYEKRF |
.A.M.TTD.QKIFPMG..L.I.L.GLAT..QT.AQ.LKF.LNL.EL.EG.QIKP.TLMS..ANLLY.K.F | |
Retrocopy | KA*MLTTDLQKIFPMGEWLDISLTGLATNFQTTAQHLKFQLNLCELNEGSQIKPYTLMSVMANLLYKKQF |
Parental | GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQA |
GP.YTEPVIA.LD.KTF.PF.CSLDLI.CP.VTDDFVVS.TC.EQ...MC...........HL.ET.SQA | |
Retrocopy | GPCYTEPVIAWLDLKTFTPFLCSLDLISCPVVTDDFVVSSTCAEQ---MCGMCESLGAHHAHLLETVSQA |
Parental | MLNAVDRDA |
MLNAVD.DA | |
Retrocopy | MLNAVDGDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 20 .96 RPM |
SRP021940_cerebellum | 0 .00 RPM | 37 .34 RPM |
SRP021940_embryo | 0 .18 RPM | 43 .17 RPM |
SRP021940_placental_villous | 0 .00 RPM | 43 .97 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 32 .09 RPM |
SRP021940_testis | 0 .00 RPM | 90 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016587 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000008246 | 1 retrocopy | |
Equus caballus | ENSECAG00000000987 | 1 retrocopy |
retro_ecab_476 ,
|
Erinaceus europaeus | ENSEEUG00000015275 | 1 retrocopy | |
Homo sapiens | ENSG00000108294 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007067 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002233 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004131 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000002997 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012363 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000012614 | 2 retrocopies | |
Mus musculus | ENSMUSG00000069744 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000594 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002598 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008505 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002270 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012938 | 7 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014258 | 3 retrocopies |