Parental gene:

HMGN3, ENSPPYG00000016791

Aliases:None
Description:high mobility group nucleosome-binding domain-containing protein 3 [Source:RefSeq peptide;Acc:NP_001125217]
Organism:Orangutan (Pongo abelii)
Coordinates:6:79898785..79933763(-)


>ENSPPYG00000016791
ATGCCGAAGAGAAAGTCTCCAGAGAATACAGAGGACAAAGATGGATCCAAAGTAACTAAACAGGAGCCCACAAGACGGTC
TGCCAGATTGTCAGCGAAACCTGCTCCACCAAAACCTGAACCCAAACCAAGAAAAACATCTGCTAAGAAAGAACCTGGAG
CAAAGATTAGCAGAGGTGCTAAAGGGAAGAAGGAGGAAAAGCAGGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAAT
GGTGAAACTAAAGCTGAAGAGATCCACATCTCTCGCTCAACTGTTAATGTCTCAACCTCCAGAGGCACCCCACCCAGCAC
ACTGTCAGTAAAGGGGCAGATTGAAACAGTGAGAGTTAAGGGCACAGAAAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .65 RPM
SRP007412_cerebellum 63 .23 RPM
SRP007412_heart 69 .78 RPM
SRP007412_kidney 50 .81 RPM
SRP007412_liver 25 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011031 ortholog_one2one 1 retrogene
retro_amel_1920,
Bos taurus ENSBTAG00000001422 ortholog_one2one 2 retrogenes
retro_btau_1524, retro_btau_1558,
Canis familiaris ENSCAFG00000002809 ortholog_one2one 1 retrogene
retro_cfam_1013,
Choloepus hoffmanni ENSCHOG00000007015 ortholog_one2one 1 retrogene
retro_chof_2241,
Callithrix jacchus ENSCJAG00000010800 ortholog_one2one 2 retrogenes
retro_cjac_1626, retro_cjac_819,
Mustela putorius furo ENSMPUG00000018092 ortholog_one2one 1 retrogene
retro_mputfur_1164,
Otolemur garnettii ENSOGAG00000016487 ortholog_one2one 1 retrogene
retro_ogar_190,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_421 80.00 51.61
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Download FASTA sequences of all ENSPPYG00000016791 retrocopies