Parental gene:

NDUFAF4, ENSPPYG00000016857

Aliases:NDUFAF4, HRPAP20
Description:NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_001126910]
Organism:Orangutan (Pongo abelii)
Coordinates:6:98321241..98331640(-)


>ENSPPYG00000016857
ATGGGAGCCCTAGTGATTCGCGGTATCAGGAATTTCAACCTAGAGAACCGAGCGGAACGTGAAATCAGCAAGATGAAGCC
CTCTGTCGCTCCCAGACACCCCTCTACCAACAGCCTCCTGCGAGAGCAGATTAGTCTCTATCCAGAAGTTAAAGGAGAGA
TTGCTCGTAAAGATAACAAGCTGCTGTCGTTACTAAAAGATGTGTATGTTGATTCCAAAGATCCTGTGCCTTCCTTGCAG
GTACAAGCTGCTGAAACATGTCAAGAGCCGAAGGAATTCAGATTGCCGAAAGACCATCACCTTGATATGATAAATACTAA
GAGCATTCCCAAAGGCAAAATTTCCATTACAGAAGCATTGTCACTTCTCAATAATCATAAGCTTTTCCCAGAAACCTGGA
CTGCTGAGAAAATAGCGCAAGAATACCAGTTAGAACAGAAAGATGTGAATTCTCTTCTTAAATATTTTGCTACTTTTGAA
GTCGAAATCTTCCCTCCTGAAGACACGAAAGCAATACAATCAAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 27 .37 RPM
SRP007412_cerebellum 20 .19 RPM
SRP007412_heart 17 .16 RPM
SRP007412_kidney 11 .87 RPM
SRP007412_liver 14 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003174 ortholog_one2one 1 retrogene
retro_btau_1763,
Choloepus hoffmanni ENSCHOG00000005145 ortholog_one2one 2 retrogenes
retro_chof_2271, retro_chof_891,
Callithrix jacchus ENSCJAG00000001235 ortholog_one2many 2 retrogenes
retro_cjac_1613, retro_cjac_1700,
Cavia porcellus ENSCPOG00000007618 ortholog_one2one 1 retrogene
retro_cpor_425,
Homo sapiens ENSG00000123545 ortholog_one2one 4 retrogenes
retro_hsap_1494, retro_hsap_2774, retro_hsap_3761, retro_hsap_477,
Gorilla gorilla ENSGGOG00000012070 ortholog_one2one 4 retrogenes
retro_ggor_1147, retro_ggor_1931, retro_ggor_2529, retro_ggor_451,
Microcebus murinus ENSMICG00000015734 ortholog_one2one 1 retrogene
retro_mmur_1624,
Macaca mulatta ENSMMUG00000018843 ortholog_one2one 4 retrogenes
retro_mmul_1717, retro_mmul_2138, retro_mmul_578, retro_mmul_734,
Mus musculus ENSMUSG00000028261 ortholog_one2one 3 retrogenes
retro_mmus_1153, retro_mmus_1290, retro_mmus_3668,
Nomascus leucogenys ENSNLEG00000013568 ortholog_one2one 4 retrogenes
retro_nleu_171, retro_nleu_1716, retro_nleu_678, retro_nleu_890,
Oryctolagus cuniculus ENSOCUG00000002152 ortholog_one2one 1 retrogene
retro_ocun_1162,
Pan troglodytes ENSPTRG00000018435 ortholog_one2one 4 retrogenes
retro_ptro_1013, retro_ptro_1877, retro_ptro_2552, retro_ptro_358,
Rattus norvegicus ENSRNOG00000007506 ortholog_one2many 3 retrogenes
retro_rnor_1617, retro_rnor_2973, retro_rnor_675,
Tursiops truncatus ENSTTRG00000010911 ortholog_one2one 1 retrogene
retro_ttru_628,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_257 76.92 89.14
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2. retro_pabe_1244 81.37 92.00
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3. retro_pabe_2241 78.41 100.00
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4. retro_pabe_3160 77.71 100.00
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Download FASTA sequences of all ENSPPYG00000016857 retrocopies