RetrogeneDB ID: | retro_mmur_1624 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_96249:1271..1685(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF4 | ||
Ensembl ID: | ENSMICG00000015734 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 [Source:HGNC Symbol;Acc:21034] |
Percent Identity: | 78.87 % |
Parental protein coverage: | 78.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGALVIRAIRNFNLENRAQREISKMKPSAAPKHPA-TKSLLREQIGSH-PEITA-ITRKDGKLLSLLKDV |
.GALVI.AIRNFN..NRAQREI.K.KPSAAPKHP..TKSLLREQIGSH.PEIT..ITRKD.KL.SLLKDV | |
Retrocopy | IGALVICAIRNFNPQNRAQREINKTKPSAAPKHPS<TKSLLREQIGSH<PEITEEITRKDDKLRSLLKDV |
Parental | YVDSKDPVSSVQVKAAEKHQEPKEFRLPKDHHISMDIKNIPK--GK-ISIVEALTLLNNHKLHPETWTAE |
.VDSKDPV.S.QVKAAE..QEPKEFRL.KDHH.SM..KNIPK..GK.ISIVEALTLLNNHKLHPET.... | |
Retrocopy | HVDSKDPVFSAQVKAAETRQEPKEFRLQKDHHVSMNVKNIPKDIGK<ISIVEALTLLNNHKLHPETENST |
Parental | KI |
.I | |
Retrocopy | RI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003174 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005145 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001235 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007618 | 1 retrocopy | |
Homo sapiens | ENSG00000123545 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000012070 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000015734 | 1 retrocopy |
retro_mmur_1624 ,
|
Macaca mulatta | ENSMMUG00000018843 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028261 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013568 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002152 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016857 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018435 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007506 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000010911 | 1 retrocopy |