Parental gene: | APOO, ENSPPYG00000020191 |
| Aliases: | None |
| Description: | apolipoprotein O [Source:HGNC Symbol;Acc:28727] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | X:23949270..24028392(-) |
>ENSPPYG00000020191
ATGTTCAAGGTAATTCAGAGGTCCGTGGGGCCAGCCAGCCTGAGCTTGCTCACCTTCAAAGTCTATGCAGCACCAAAAAA
GGACTCACCTCCCAAAAATTCCGTGAAGGTTGATGAGCTTTCACTCTACTCAGTTCCTGAGGGTCAGTCGAAGTATGTGG
AGGAGGCAAGGAGCCAGCTTGAAGAAAGCATCTCACAGCTCCGACACTATTGTGAGCCATACACAACCTGGTGTCAGGAA
ACGTACTCCCAAACTAAGCCCAAGATGCAAAGTTTGGTTCAATGGGGGTTAGACAGCTATGACTATCTCCAAAATGCACC
TCCTGGATTTTTTCCGAGACTTGGTGTTATTGGTTTTGCTGGCCTTATTGGACTCCTTTTGGCTAGAGGTTCAAAAATAA
AGAAACTAGTGTATCCGCCTGGTTTCATGGGATTAGCTGCCTCCCTCTATTATCCACAACAAGCCATCGTGTTTGCCCAG
GTCAGTGGGGAGAGATTATATGACTGGGGTTTACGAGGATATATAGTCATAGAAGATTTGTGGAAGGAGAACTTTCAAAA
GCCAGGAAATGTGAAGAATTCACCTGGAACGAAGTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 15 .15 RPM |
| SRP007412_cerebellum | 13 .01 RPM |
| SRP007412_heart | 15 .44 RPM |
| SRP007412_kidney | 13 .89 RPM |
| SRP007412_liver | 3 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012749 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000226 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004909 | ortholog_one2many | 8 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000006710 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000013441 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000014150 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000000029 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000184831 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001200 | ortholog_one2one | 4 retrogenes | |
| Loxodonta africana | ENSLAFG00000029070 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014222 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000016361 | ortholog_one2one | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000025554 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000109 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000079508 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010026 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000020516 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021742 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002530 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008734 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012174 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010239 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_856 | 74.81 | 67.68 | Please wait, loading  |
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| 2. | retro_pabe_1394 | 84.21 | 66.16 | Please wait, loading |
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| 3. | retro_pabe_1417 | 85.38 | 65.15 | Please wait, loading |
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| 4. | retro_pabe_2215 | 70.17 | 90.40 | Please wait, loading |
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| 5. | retro_pabe_2417 | 70.17 | 90.40 | Please wait, loading |
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| 6. | retro_pabe_2434 | 84.34 | 100.00 | Please wait, loading |
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| 7. | retro_pabe_2702 | 70.15 | 66.67 | Please wait, loading |
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Download FASTA sequences of all ENSPPYG00000020191 retrocopies