Parental gene:

APOOL, ENSPPYG00000020516

Aliases:None
Description:apolipoprotein O-like [Source:HGNC Symbol;Acc:24009]
Organism:Orangutan (Pongo abelii)
Coordinates:X:83391408..83480645(+)


>ENSPPYG00000020516
ATGGCGGCCATCAGGATGGGAAAACTGACAACCATGCCTGCAGGTCTGATATATGCATCTGTAAGTGTACATGCAGCCAA
AGAAGAGGAATCCAAAAAGCAGCTAGTGAAACCAGAGCAGCTCCCCATATATACTGTACCACCGCTCCAGTCTAAATATG
TTGAAGAGCAGCCTGGTCATTTACAAATGGGCTTTGCTTCCATCCGCACTGCAACCGGTTGTTATATTGGCTGGTGCAAG
GGTGTTTATGTCTTTGTGAAAAATGGGATAATGGATACAGTACAATTTGGAAAAGATGCTTATGTCTATATGAAGAATCC
TCCTCGAGATTTTCTTCCGAAAATGGGAGTTATTACAGTTTCAGGATTGGCGGGCTTGGTTTCAGCGAGAAAAGTAACAG
CAAAAAAGATATATGCTACAAGCCAGCAAATTTTTGGAGCAGTTAAATCATTGTGGACAAAAAGCAGCAAAGAAGAGTCA
CTCCCTAAACCTAAAGAAAAAACTAAGCTAGGATCCTCTTCCGAAATAGAAGTACCTGCAAAAACAACTCACGTCTTGAA
ACACTCAGTGCCCTTGCCAACAGAACTCAGCTCTGAAGCAAAGACCAAATCAGAATCCACCTCAGGTGGAACACAGTTTA
TGCCTGACCCCAAGCTCATGGATCACGGGCAGTCCCACCCAGAAGATATAGATATGTACAGCACTAGAAGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2 .27 RPM
SRP007412_cerebellum 2 .07 RPM
SRP007412_heart 2 .20 RPM
SRP007412_kidney 1 .99 RPM
SRP007412_liver 1 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000829 ortholog_one2one 1 retrogene
retro_amel_1035,
Canis familiaris ENSCAFG00000017383 ortholog_one2one 1 retrogene
retro_cfam_1490,
Callithrix jacchus ENSCJAG00000008249 ortholog_one2one 2 retrogenes
retro_cjac_1783, retro_cjac_2464,
Dipodomys ordii ENSDORG00000011045 ortholog_one2one 1 retrogene
retro_dord_373,
Equus caballus ENSECAG00000009229 ortholog_one2one 1 retrogene
retro_ecab_577,
Homo sapiens ENSG00000155008 ortholog_one2one 1 retrogene
retro_hsap_3253,
Gorilla gorilla ENSGGOG00000016329 ortholog_one2one 1 retrogene
retro_ggor_2213,
Loxodonta africana ENSLAFG00000008844 ortholog_one2one 1 retrogene
retro_lafr_1035,
Microcebus murinus ENSMICG00000015844 ortholog_one2one 1 retrogene
retro_mmur_1511,
Myotis lucifugus ENSMLUG00000011384 ortholog_one2one 1 retrogene
retro_mluc_1364,
Macaca mulatta ENSMMUG00000004335 ortholog_one2one 1 retrogene
retro_mmul_2045,
Mustela putorius furo ENSMPUG00000001899 possible_ortholog 3 retrogenes
retro_mputfur_606, retro_mputfur_734, retro_mputfur_874,
Nomascus leucogenys ENSNLEG00000002634 ortholog_one2one 1 retrogene
retro_nleu_1702,
Pongo abelii ENSPPYG00000020191 within_species_paralog 7 retrogenes
retro_pabe_1394, retro_pabe_1417, retro_pabe_2215, retro_pabe_2417, retro_pabe_2434, retro_pabe_2702, retro_pabe_856,
Pan troglodytes ENSPTRG00000022067 ortholog_one2one 1 retrogene
retro_ptro_2200,
Sus scrofa ENSSSCG00000012459 ortholog_one2many 1 retrogene
retro_sscr_610,
Tursiops truncatus ENSTTRG00000000429 ortholog_one2one 1 retrogene
retro_ttru_1337,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2697 91.27 53.16
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Download FASTA sequences of all ENSPPYG00000020516 retrocopies