Parental gene:

ENSCJAG00000004909

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:22416973..22488328(-)


>ENSCJAG00000004909
ATGTTCAAGGTAATTCAGAGGTCCGTGGGGCCGGCCAGCCTGAGCTTGCTCACCTTCAAAGTCTATGCTGTACCAAAAAA
GGACTCACCTCCCAAAAATTCTGTGAAGGTTGATGAGCTTTCACTCTACTCAGTTCCCAAAGGTCAATCGAAGTATGTGG
AGGAGTCAAGGAGCCCACTTGAAGAAAGCATCTCACAGCTTCGACACTACTGTGAGCCATACACAAACTGGTGTCAGGAA
ACGTACTCCCAAACTAAGCCCAAGATGCAAAGTTTGGTTCAATGGGGGTTAGACAGCTATGACTATCTCCAAAATGCACC
TCCTGGATTTTTTCCGAGACTTGGTGTTATTGGTTGTGCTGGCCTTATTGGACTCTTTTTGGCTAGAGGTTCAAAAATGA
AGAAGCTAGTGTATCCGCCTGGTTTCATGGGATTAGCTGCCTCCCTCTATTATCCACAACAAGCCATCGTGTTTGCCCAG
GTCAGTGGGGAGAGATTATATGACTGGGGTTTACGAGGATATATCGTCATAGAAGATTTGTGGAAGGAGAACTTTCAAAA
GCCAGGAAATGTGAAGAATTCACCTGGAACTAAGTAG

Library Parental gene expression (RPM)
SRP051959_colon 6 .32 RPM
SRP051959_heart 7 .84 RPM
SRP051959_kidney 8 .81 RPM
SRP051959_liver 4 .09 RPM
SRP051959_lung 2 .46 RPM
SRP051959_lymph_node 2 .19 RPM
SRP051959_skeletal_muscle 8 .32 RPM
SRP051959_spleen 2 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012749 ortholog_one2many 1 retrogene
retro_amel_1282,
Choloepus hoffmanni ENSCHOG00000000226 ortholog_one2many 2 retrogenes
retro_chof_2372, retro_chof_839,
Callithrix jacchus ENSCJAG00000008249 within_species_paralog 2 retrogenes
retro_cjac_1783, retro_cjac_2464,
Cavia porcellus ENSCPOG00000004197 possible_ortholog 1 retrogene
retro_cpor_309,
Dasypus novemcinctus ENSDNOG00000006710 ortholog_one2many 1 retrogene
retro_dnov_2450,
Equus caballus ENSECAG00000013441 ortholog_one2many 1 retrogene
retro_ecab_145,
Echinops telfairi ENSETEG00000014150 ortholog_one2many 3 retrogenes
retro_etel_1052, retro_etel_516, retro_etel_711,
Felis catus ENSFCAG00000000029 ortholog_one2many 3 retrogenes
retro_fcat_1203, retro_fcat_1657, retro_fcat_1798,
Homo sapiens ENSG00000184831 ortholog_one2many 5 retrogenes
retro_hsap_1018, retro_hsap_1693, retro_hsap_2670, retro_hsap_3047, retro_hsap_3259,
Gorilla gorilla ENSGGOG00000001200 ortholog_one2many 4 retrogenes
retro_ggor_1269, retro_ggor_1863, retro_ggor_2098, retro_ggor_806,
Loxodonta africana ENSLAFG00000029070 ortholog_one2many 1 retrogene
retro_lafr_1114,
Macropus eugenii ENSMEUG00000014222 ortholog_one2many 1 retrogene
retro_meug_700,
Macaca mulatta ENSMMUG00000016361 ortholog_one2many 4 retrogenes
retro_mmul_1584, retro_mmul_1886, retro_mmul_2051, retro_mmul_814,
Monodelphis domestica ENSMODG00000025554 ortholog_one2many 1 retrogene
retro_mdom_1510,
Mustela putorius furo ENSMPUG00000000109 ortholog_many2many 1 retrogene
retro_mputfur_109,
Mus musculus ENSMUSG00000079508 possible_ortholog 1 retrogene
retro_mmus_282,
Nomascus leucogenys ENSNLEG00000010026 ortholog_one2many 5 retrogenes
retro_nleu_1167, retro_nleu_1338, retro_nleu_1944, retro_nleu_456, retro_nleu_898,
Otolemur garnettii ENSOGAG00000001960 possible_ortholog 6 retrogenes
retro_ogar_1083, retro_ogar_1104, retro_ogar_2092, retro_ogar_2466, retro_ogar_2927, retro_ogar_3094,
Pongo abelii ENSPPYG00000020191 ortholog_one2many 7 retrogenes
retro_pabe_1394, retro_pabe_1417, retro_pabe_2215, retro_pabe_2417, retro_pabe_2434, retro_pabe_2702, retro_pabe_856,
Pan troglodytes ENSPTRG00000021742 ortholog_one2many 5 retrogenes
retro_ptro_1147, retro_ptro_1799, retro_ptro_1992, retro_ptro_2205, retro_ptro_746,
Pteropus vampyrus ENSPVAG00000002530 ortholog_one2many 2 retrogenes
retro_pvam_128, retro_pvam_594,
Rattus norvegicus ENSRNOG00000046918 possible_ortholog 4 retrogenes
retro_rnor_1022, retro_rnor_1986, retro_rnor_2096, retro_rnor_2308,
Sarcophilus harrisii ENSSHAG00000008734 ortholog_many2many 1 retrogene
retro_shar_125,
Sus scrofa ENSSSCG00000012174 ortholog_one2many 1 retrogene
retro_sscr_774,
Tupaia belangeri ENSTBEG00000014888 possible_ortholog 6 retrogenes
retro_tbel_1153, retro_tbel_4004, retro_tbel_4261, retro_tbel_4698, retro_tbel_715, retro_tbel_96,
Tarsius syrichta ENSTSYG00000010239 ortholog_one2many 2 retrogenes
retro_tsyr_1089, retro_tsyr_2155,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1360 84.85 100.00
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2. retro_cjac_1417 79.64 83.84
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3. retro_cjac_1448 95.96 100.00
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4. retro_cjac_1767 94.95 99.49
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5. retro_cjac_1792 66.84 96.97
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6. retro_cjac_1896 81.56 89.90
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7. retro_cjac_2038 58.73 93.43
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8. retro_cjac_2063 84.42 100.00
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Download FASTA sequences of all ENSCJAG00000004909 retrocopies