Parental gene:

APOO, ENSPTRG00000021742

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:24063355..24136664(-)


>ENSPTRG00000021742
ATGTTCAAGGTAATTCAGAGATCCATGGGGCCAGCCAGCCTGAGCTTGCTCACCTTCAAAGTCTATGCAGCACCAAAAAA
GGACTCACCTCCCAAAAATTCCGTGAAGGTTGATGAGCTTTCACTCTACTCAGTTCCTGAGGGTCAATCGAAGTATGTGG
AGGAGGCAAGGAGCCAGCTCGAAGAAAGCATCTCACAGCTCCGACACTATTGCGAGCCATACACAACCTGGTGTCAGGAA
ACGTACTCCCAAACTAAGCCCAAGATGCAAAGTTTGGTTCAATGGGGGTTAGACAGCTATGACTATCTCCAAAATGCACC
TCCTGGATTTTTTCCGAGACTTGGTGTTATTGGTTTTGCTGGCCTTATTGGACTCCTTTTGGCTAGAGGTTCAAAAATAA
AGAAGCTAGTGTATCCGCCTGGTTTCATGGGATTAGCTGCCTCCCTCTATTATCCACAACAAGCCATCGTGTTTGCCCAG
GTCAGTGGGGAGAGATTATATGACTGGGGTTTACGAGGATATATAGTCATAGAAGATTTGTGGAAGGAGAACTTTCAAAA
GCCAGGAAATGTGAAGAATTCACCTGGAACTAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 22 .06 RPM
SRP007412_cerebellum 8 .42 RPM
SRP007412_heart 20 .64 RPM
SRP007412_kidney 17 .99 RPM
SRP007412_liver 4 .29 RPM
SRP007412_testis 5 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012749 ortholog_one2one 1 retrogene
retro_amel_1282,
Choloepus hoffmanni ENSCHOG00000000226 ortholog_one2one 2 retrogenes
retro_chof_2372, retro_chof_839,
Callithrix jacchus ENSCJAG00000004909 ortholog_one2many 8 retrogenes
retro_cjac_1360, retro_cjac_1417, retro_cjac_1448, retro_cjac_1767, retro_cjac_1792, retro_cjac_1896, retro_cjac_2038, retro_cjac_2063,
Dasypus novemcinctus ENSDNOG00000006710 ortholog_one2one 1 retrogene
retro_dnov_2450,
Equus caballus ENSECAG00000013441 ortholog_one2one 1 retrogene
retro_ecab_145,
Echinops telfairi ENSETEG00000014150 ortholog_one2one 3 retrogenes
retro_etel_1052, retro_etel_516, retro_etel_711,
Felis catus ENSFCAG00000000029 ortholog_one2one 3 retrogenes
retro_fcat_1203, retro_fcat_1657, retro_fcat_1798,
Homo sapiens ENSG00000184831 ortholog_one2one 5 retrogenes
retro_hsap_1018, retro_hsap_1693, retro_hsap_2670, retro_hsap_3047, retro_hsap_3259,
Gorilla gorilla ENSGGOG00000001200 ortholog_one2one 4 retrogenes
retro_ggor_1269, retro_ggor_1863, retro_ggor_2098, retro_ggor_806,
Loxodonta africana ENSLAFG00000029070 ortholog_one2one 1 retrogene
retro_lafr_1114,
Macropus eugenii ENSMEUG00000014222 ortholog_one2one 1 retrogene
retro_meug_700,
Macaca mulatta ENSMMUG00000016361 ortholog_one2one 4 retrogenes
retro_mmul_1584, retro_mmul_1886, retro_mmul_2051, retro_mmul_814,
Monodelphis domestica ENSMODG00000025554 ortholog_one2one 1 retrogene
retro_mdom_1510,
Mustela putorius furo ENSMPUG00000000109 ortholog_one2many 1 retrogene
retro_mputfur_109,
Mus musculus ENSMUSG00000079508 possible_ortholog 1 retrogene
retro_mmus_282,
Nomascus leucogenys ENSNLEG00000010026 ortholog_one2one 5 retrogenes
retro_nleu_1167, retro_nleu_1338, retro_nleu_1944, retro_nleu_456, retro_nleu_898,
Pongo abelii ENSPPYG00000020191 ortholog_one2one 7 retrogenes
retro_pabe_1394, retro_pabe_1417, retro_pabe_2215, retro_pabe_2417, retro_pabe_2434, retro_pabe_2702, retro_pabe_856,
Pan troglodytes ENSPTRG00000022067 within_species_paralog 1 retrogene
retro_ptro_2200,
Pteropus vampyrus ENSPVAG00000002530 ortholog_one2one 2 retrogenes
retro_pvam_128, retro_pvam_594,
Sarcophilus harrisii ENSSHAG00000008734 ortholog_one2many 1 retrogene
retro_shar_125,
Sus scrofa ENSSSCG00000012174 ortholog_one2one 1 retrogene
retro_sscr_774,
Tarsius syrichta ENSTSYG00000010239 ortholog_one2one 2 retrogenes
retro_tsyr_1089, retro_tsyr_2155,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_746 77.61 67.68
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_1147 86.36 66.16
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_1799 71.67 90.40
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_1992 84.34 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ptro_2205 71.50 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000021742 retrocopies