Parental gene:

ENSPPYG00000029576

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:5:73574493..73581087(+)


>ENSPPYG00000029576
ATGAAAGAAACAATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
CAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAA
ACAATATCTCTGGTATTGAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAG
GCATCTCTGGCAGCGAACACTTTCACCATTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGCTACCCAGCATCTT
AAACCAGCTTGGTGCGGATAGTCTGACTAGTTTAAGGAGACTGGCCGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAG
CACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAG
GCAAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .17 RPM
SRP007412_cerebellum 40 .37 RPM
SRP007412_heart 49 .76 RPM
SRP007412_kidney 63 .01 RPM
SRP007412_liver 69 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010012 possible_ortholog 5 retrogenes
retro_btau_1161, retro_btau_1344, retro_btau_1361, retro_btau_459, retro_btau_551,
Callithrix jacchus ENSCJAG00000016600 possible_ortholog 4 retrogenes
retro_cjac_1454, retro_cjac_1673, retro_cjac_2640, retro_cjac_281,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Equus caballus ENSECAG00000021629 possible_ortholog 1 retrogene
retro_ecab_200,
Echinops telfairi ENSETEG00000017341 ortholog_one2one 5 retrogenes
retro_etel_1216, retro_etel_1394, retro_etel_1997, retro_etel_405, retro_etel_960,
Gorilla gorilla ENSGGOG00000000166 ortholog_one2one 10 retrogenes
retro_ggor_1082, retro_ggor_1682, retro_ggor_1961, retro_ggor_2054, retro_ggor_2399, retro_ggor_2647, retro_ggor_2667, retro_ggor_548, retro_ggor_81, retro_ggor_946,
Microcebus murinus ENSMICG00000017182 possible_ortholog 3 retrogenes
retro_mmur_1219, retro_mmur_1301, retro_mmur_651,
Monodelphis domestica ENSMODG00000001762 possible_ortholog 3 retrogenes
retro_mdom_189, retro_mdom_454, retro_mdom_931,
Nomascus leucogenys ENSNLEG00000004718 possible_ortholog 9 retrogenes
retro_nleu_1081, retro_nleu_1199, retro_nleu_1284, retro_nleu_1446, retro_nleu_1797, retro_nleu_2526, retro_nleu_451, retro_nleu_496, retro_nleu_734,
Oryctolagus cuniculus ENSOCUG00000024914 ortholog_one2one 6 retrogenes
retro_ocun_1186, retro_ocun_1299, retro_ocun_1364, retro_ocun_446, retro_ocun_857, retro_ocun_916,
Pongo abelii ENSPPYG00000001353 within_species_paralog 2 retrogenes
retro_pabe_1850, retro_pabe_3010,
Rattus norvegicus ENSRNOG00000016912 ortholog_one2many 9 retrogenes
retro_rnor_187, retro_rnor_194, retro_rnor_2121, retro_rnor_2520, retro_rnor_2990, retro_rnor_2991, retro_rnor_2999, retro_rnor_836, retro_rnor_953,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_180 89.58 58.64
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2. retro_pabe_558 57.14 51.23
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3. retro_pabe_649 58.64 98.77
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4. retro_pabe_1154 79.75 100.00
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5. retro_pabe_1477 77.08 58.64
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6. retro_pabe_1885 99.38 100.00
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7. retro_pabe_1956 86.67 100.00
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8. retro_pabe_2207 95.09 100.00
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9. retro_pabe_2458 85.45 100.00
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10. retro_pabe_2918 86.51 77.78
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11. retro_pabe_2919 87.30 77.78
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12. retro_pabe_2932 85.28 100.00
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13. retro_pabe_3329 71.08 51.23
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14. retro_pabe_3484 89.36 86.42
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Download FASTA sequences of all ENSPPYG00000029576 retrocopies