Parental gene: | ENSPPYG00000029576 |
| Aliases: | None |
| Description: | None |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:73574493..73581087(+) |
>ENSPPYG00000029576
ATGAAAGAAACAATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
CAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAA
ACAATATCTCTGGTATTGAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAG
GCATCTCTGGCAGCGAACACTTTCACCATTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGCTACCCAGCATCTT
AAACCAGCTTGGTGCGGATAGTCTGACTAGTTTAAGGAGACTGGCCGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAG
CACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAG
GCAAACTGA
ATGAAAGAAACAATCATGAACCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
CAGAAAGAAGAAGGTGGTTCATAGAACAGCCACAGCAGATGACAAAAAACTTCAGTTCTCCTTAAAGAAGTTAGGGGTAA
ACAATATCTCTGGTATTGAAGAGGTGAATATGTTTACAAACCAAGGAACAGTGATCCACTTTAACAACCCTAAAGTTCAG
GCATCTCTGGCAGCGAACACTTTCACCATTACAGGCCATGCTGAGACGAAGCAGCTGACAGAAATGCTACCCAGCATCTT
AAACCAGCTTGGTGCGGATAGTCTGACTAGTTTAAGGAGACTGGCCGAAGCTCTGCCCAAACAATCTGTGGATGGAAAAG
CACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCCAGATCTTGTGGAGAATTTTGATGAGGCTTCCAAGAATGAG
GCAAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 34 .17 RPM |
| SRP007412_cerebellum | 40 .37 RPM |
| SRP007412_heart | 49 .76 RPM |
| SRP007412_kidney | 63 .01 RPM |
| SRP007412_liver | 69 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000010012 | possible_ortholog | 5 retrogenes | |
| Callithrix jacchus | ENSCJAG00000016600 | possible_ortholog | 4 retrogenes | |
| Ciona savignyi | ENSCSAVG00000009653 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000021629 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000017341 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000000166 | ortholog_one2one | 10 retrogenes | |
| Microcebus murinus | ENSMICG00000017182 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000001762 | possible_ortholog | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004718 | possible_ortholog | 9 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000024914 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000001353 | within_species_paralog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016912 | ortholog_one2many | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_180 | 89.58 | 58.64 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_558 | 57.14 | 51.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_649 | 58.64 | 98.77 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1154 | 79.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1477 | 77.08 | 58.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_1885 | 99.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_1956 | 86.67 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_2207 | 95.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pabe_2458 | 85.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pabe_2918 | 86.51 | 77.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_pabe_2919 | 87.30 | 77.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_pabe_2932 | 85.28 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_pabe_3329 | 71.08 | 51.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_pabe_3484 | 89.36 | 86.42 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000029576 retrocopies