Parental gene:

GAPDH, ENSPTRG00000004577

Aliases:GAPDH, GAPD
Description:glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4141]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:12:6694196..6698114(+)


>ENSPTRG00000004577
ATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGTAA
AGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTTCCAATATGATTCCACCCATG
GCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAATGGAAATCCCATCACCATCTTCCAGGAGCGA
GATCCCTCCAAAATCAAGTGGGGCGATGCTGGCGCTGAGTACGTCGTGGAGTCCACTGGCGTCTTCACCACCATGGAGAA
GGCTGGGGCTCATTTGCAGGGGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGACGCCCCCATGTTCGTCATGG
GTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTG
GCCAAGGTCATCCATGACAACTTCGGTATCGTGGAAGGACTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGAC
TGTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCTACTGGCGCTG
CCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACTGCCAACGTG
TCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATCAAGAAGGTGGTGAAGCAGGCGTCGGA
GGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAGGTGGTCTCCTCTGACTTCAACAGCGACACCCACTCCTCCA
CCTTCGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTAC
AGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 2168 .65 RPM
SRP007412_cerebellum 1166 .58 RPM
SRP007412_heart 1898 .41 RPM
SRP007412_kidney 1211 .09 RPM
SRP007412_liver 1233 .46 RPM
SRP007412_testis 203 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
retro_amel_1189, retro_amel_146, retro_amel_1792, retro_amel_1826, retro_amel_549,
Ailuropoda melanoleuca ENSAMEG00000014329 possible_ortholog 35 retrogenes
retro_amel_1050, retro_amel_1082, retro_amel_1134, retro_amel_1174, retro_amel_1229, retro_amel_1235, retro_amel_1253, retro_amel_1308, retro_amel_1538, retro_amel_1550, retro_amel_1598, retro_amel_1605, retro_amel_1614, retro_amel_1658, retro_amel_1776, retro_amel_1801, retro_amel_1802, retro_amel_187, retro_amel_1900, retro_amel_1904, retro_amel_268, retro_amel_294, retro_amel_387, retro_amel_443, retro_amel_471, retro_amel_601, retro_amel_605, retro_amel_641, retro_amel_738, retro_amel_750, retro_amel_762, retro_amel_852, retro_amel_899, retro_amel_961, retro_amel_992,
Canis familiaris ENSCAFG00000015077 possible_ortholog 4 retrogenes
retro_cfam_122, retro_cfam_214, retro_cfam_3, retro_cfam_7,
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
retro_cpor_125,
Erinaceus europaeus ENSEEUG00000011444 ortholog_one2one 3 retrogenes
retro_eeur_427, retro_eeur_569, retro_eeur_677,
Homo sapiens ENSG00000111640 ortholog_one2one 42 retrogenes
retro_hsap_1014, retro_hsap_1183, retro_hsap_1188, retro_hsap_1489, retro_hsap_1490, retro_hsap_1582, retro_hsap_1672, retro_hsap_188, retro_hsap_2006, retro_hsap_2094, retro_hsap_2225, retro_hsap_2414, retro_hsap_2589, retro_hsap_2711, retro_hsap_2733, retro_hsap_2852, retro_hsap_2956, retro_hsap_307, retro_hsap_3096, retro_hsap_3268, retro_hsap_3398, retro_hsap_3491, retro_hsap_3543, retro_hsap_3599, retro_hsap_3618, retro_hsap_364, retro_hsap_3665, retro_hsap_3697, retro_hsap_4093, retro_hsap_421, retro_hsap_439, retro_hsap_441, retro_hsap_442, retro_hsap_443, retro_hsap_444, retro_hsap_445, retro_hsap_4806, retro_hsap_4820, retro_hsap_489, retro_hsap_4927, retro_hsap_710, retro_hsap_954,
Gorilla gorilla ENSGGOG00000009553 ortholog_one2one 30 retrogenes
retro_ggor_1142, retro_ggor_1143, retro_ggor_1260, retro_ggor_1450, retro_ggor_1621, retro_ggor_1659, retro_ggor_1889, retro_ggor_1902, retro_ggor_1982, retro_ggor_2126, retro_ggor_2224, retro_ggor_2443, retro_ggor_2477, retro_ggor_2500, retro_ggor_2991, retro_ggor_3004, retro_ggor_341, retro_ggor_376, retro_ggor_412, retro_ggor_424, retro_ggor_427, retro_ggor_428, retro_ggor_429, retro_ggor_430, retro_ggor_431, retro_ggor_459, retro_ggor_804, retro_ggor_921, retro_ggor_922, retro_ggor_926,
Loxodonta africana ENSLAFG00000002780 possible_ortholog 3 retrogenes
retro_lafr_421, retro_lafr_46, retro_lafr_954,
Macropus eugenii ENSMEUG00000015273 ortholog_one2one 67 retrogenes
retro_meug_1057, retro_meug_1066, retro_meug_1080, retro_meug_1086, retro_meug_1197, retro_meug_1206, retro_meug_1249, retro_meug_1286, retro_meug_1310, retro_meug_1319, retro_meug_1352, retro_meug_1369, retro_meug_1377, retro_meug_1390, retro_meug_1423, retro_meug_1429, retro_meug_1542, retro_meug_1595, retro_meug_1646, retro_meug_165, retro_meug_1686, retro_meug_1759, retro_meug_1776, retro_meug_180, retro_meug_185, retro_meug_1870, retro_meug_1884, retro_meug_1889, retro_meug_2039, retro_meug_2046, retro_meug_2047, retro_meug_2085, retro_meug_2088, retro_meug_2113, retro_meug_2141, retro_meug_2178, retro_meug_239, retro_meug_374, retro_meug_382, retro_meug_383, retro_meug_393, retro_meug_416, retro_meug_421, retro_meug_450, retro_meug_453, retro_meug_460, retro_meug_50, retro_meug_595, retro_meug_602, retro_meug_630, retro_meug_643, retro_meug_661, retro_meug_678, retro_meug_680, retro_meug_70, retro_meug_720, retro_meug_731, retro_meug_739, retro_meug_758, retro_meug_761, retro_meug_777, retro_meug_79, retro_meug_834, retro_meug_844, retro_meug_866, retro_meug_879, retro_meug_890,
Microcebus murinus ENSMICG00000006546 ortholog_one2one 16 retrogenes
retro_mmur_1049, retro_mmur_1064, retro_mmur_1084, retro_mmur_1255, retro_mmur_1431, retro_mmur_1446, retro_mmur_145, retro_mmur_1463, retro_mmur_1553, retro_mmur_1567, retro_mmur_329, retro_mmur_429, retro_mmur_464, retro_mmur_670, retro_mmur_780, retro_mmur_873,
Macaca mulatta ENSMMUG00000018679 ortholog_one2one 33 retrogenes
retro_mmul_1016, retro_mmul_1469, retro_mmul_1529, retro_mmul_1535, retro_mmul_1713, retro_mmul_1776, retro_mmul_1812, retro_mmul_1833, retro_mmul_1839, retro_mmul_1893, retro_mmul_2056, retro_mmul_2116, retro_mmul_2133, retro_mmul_2134, retro_mmul_2220, retro_mmul_2252, retro_mmul_2253, retro_mmul_2413, retro_mmul_2430, retro_mmul_2461, retro_mmul_2562, retro_mmul_2572, retro_mmul_480, retro_mmul_494, retro_mmul_513, retro_mmul_523, retro_mmul_524, retro_mmul_525, retro_mmul_526, retro_mmul_605, retro_mmul_650, retro_mmul_776, retro_mmul_784,
Monodelphis domestica ENSMODG00000018066 ortholog_one2many 41 retrogenes
retro_mdom_1060, retro_mdom_1089, retro_mdom_1104, retro_mdom_1137, retro_mdom_1161, retro_mdom_1184, retro_mdom_1233, retro_mdom_1241, retro_mdom_1317, retro_mdom_1358, retro_mdom_1384, retro_mdom_142, retro_mdom_1494, retro_mdom_1544, retro_mdom_1610, retro_mdom_1631, retro_mdom_1661, retro_mdom_1691, retro_mdom_1698, retro_mdom_1743, retro_mdom_1810, retro_mdom_1908, retro_mdom_2022, retro_mdom_275, retro_mdom_310, retro_mdom_354, retro_mdom_382, retro_mdom_497, retro_mdom_531, retro_mdom_552, retro_mdom_584, retro_mdom_590, retro_mdom_591, retro_mdom_628, retro_mdom_678, retro_mdom_766, retro_mdom_816, retro_mdom_828, retro_mdom_832, retro_mdom_835, retro_mdom_863,
Mustela putorius furo ENSMPUG00000016891 possible_ortholog 28 retrogenes
retro_mputfur_1027, retro_mputfur_105, retro_mputfur_1051, retro_mputfur_1091, retro_mputfur_1152, retro_mputfur_1197, retro_mputfur_1198, retro_mputfur_1229, retro_mputfur_1278, retro_mputfur_1422, retro_mputfur_1461, retro_mputfur_1483, retro_mputfur_1630, retro_mputfur_244, retro_mputfur_300, retro_mputfur_31, retro_mputfur_317, retro_mputfur_380, retro_mputfur_481, retro_mputfur_513, retro_mputfur_555, retro_mputfur_612, retro_mputfur_717, retro_mputfur_789, retro_mputfur_817, retro_mputfur_842, retro_mputfur_88, retro_mputfur_925,
Mus musculus ENSMUSG00000057666 possible_ortholog 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Pongo abelii ENSPPYG00000004189 ortholog_one2one 38 retrogenes
retro_pabe_1238, retro_pabe_1239, retro_pabe_1303, retro_pabe_1377, retro_pabe_1458, retro_pabe_1641, retro_pabe_1767, retro_pabe_1779, retro_pabe_1975, retro_pabe_2003, retro_pabe_2262, retro_pabe_2272, retro_pabe_2360, retro_pabe_2452, retro_pabe_2706, retro_pabe_2793, retro_pabe_284, retro_pabe_285, retro_pabe_286, retro_pabe_287, retro_pabe_2883, retro_pabe_2927, retro_pabe_2969, retro_pabe_298, retro_pabe_2981, retro_pabe_3007, retro_pabe_3038, retro_pabe_3154, retro_pabe_3355, retro_pabe_341, retro_pabe_373, retro_pabe_3735, retro_pabe_3748, retro_pabe_444, retro_pabe_542, retro_pabe_614, retro_pabe_785, retro_pabe_852,
Pan troglodytes ENSPTRG00000010848 within_species_paralog 1 retrogene
retro_ptro_2211,
Rattus norvegicus ENSRNOG00000018630 possible_ortholog 4 retrogenes
retro_rnor_107, retro_rnor_335, retro_rnor_407, retro_rnor_91,
Rattus norvegicus ENSRNOG00000030638 possible_ortholog 2 retrogenes
retro_rnor_1571, retro_rnor_1777,
Sarcophilus harrisii ENSSHAG00000014953 ortholog_one2many 4 retrogenes
retro_shar_178, retro_shar_330, retro_shar_40, retro_shar_533,
Xenopus tropicalis ENSXETG00000033975 ortholog_one2one 1 retrogene
retro_xtro_70,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_173 70.63 79.40
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2. retro_ptro_186 70.38 92.24
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3. retro_ptro_187 68.31 54.33
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4. retro_ptro_188 73.28 73.13
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5. retro_ptro_189 76.33 100.00
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6. retro_ptro_190 71.71 60.30
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7. retro_ptro_191 81.85 100.00
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8. retro_ptro_248 73.33 56.42
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9. retro_ptro_285 70.66 99.10
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10. retro_ptro_322 74.71 100.00
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11. retro_ptro_369 68.02 65.67
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12. retro_ptro_507 75.81 55.22
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13. retro_ptro_661 74.65 63.58
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14. retro_ptro_748 87.83 99.40
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15. retro_ptro_811 84.48 100.00
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16. retro_ptro_815 52.27 63.88
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17. retro_ptro_1008 79.84 72.24
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18. retro_ptro_1009 74.88 60.90
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19. retro_ptro_1065 85.59 100.00
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20. retro_ptro_1133 88.76 79.10
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21. retro_ptro_1337 84.18 99.40
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22. retro_ptro_1390 81.79 99.40
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23. retro_ptro_1513 73.97 93.73
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24. retro_ptro_1539 78.27 99.40
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25. retro_ptro_1573 69.23 83.88
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26. retro_ptro_1832 70.20 57.31
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27. retro_ptro_1847 60.38 93.13
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28. retro_ptro_1932 70.59 99.40
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29. retro_ptro_2001 85.63 99.10
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30. retro_ptro_2092 65.05 55.22
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31. retro_ptro_2309 81.97 69.25
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32. retro_ptro_2365 83.68 85.67
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33. retro_ptro_2409 86.09 100.00
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34. retro_ptro_2447 90.77 100.00
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35. retro_ptro_2459 57.59 55.82
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36. retro_ptro_2487 80.98 97.01
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37. retro_ptro_2506 80.42 98.81
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38. retro_ptro_2777 69.69 93.73
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39. retro_ptro_2939 82.85 81.19
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40. retro_ptro_2986 66.07 66.27
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41. retro_ptro_3196 94.33 100.00
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42. retro_ptro_3209 89.57 82.09
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43. retro_ptro_3310 65.66 57.61
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Download FASTA sequences of all ENSPTRG00000004577 retrocopies