Parental gene:

GAPDH, ENSAMEG00000014329

Aliases:None
Description:Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1M704]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192900.1:896029..899485(-)


>ENSAMEG00000014329
ATGGTGAAGGTCGGAGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGCAAAGTGGA
TATTGTCGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTACGATTCCACCCACGGCAAAT
TCCACGGCACAGTCAAGGCTGAGAACGGGAAACTTGTCATCAATGGAAAGTCCATCTCCATCTTCCAGGAGCGAGATCCC
GCCAACATCAAATGGGGTGATGCTGGTGCTGAGTATGTTGTGGAGTCCACTGGGGTCTTCACGACCATGGAGAAGGCTGG
GGCTCACCTGAAGGGCGGGGCCAAGAGGGTCATCATCTCTGCCCCTTCTGCTGATGCCCCCATGTTCGTGATGGGTGTGA
ACCATGAGAAGTATGACAACTCCCTCAAGATTGTCAGCAATGCCTCCTGTACCACCAACTGCTTGGCTCCTCTGGCCAAG
GTCATCCATGACAACTTCGGCATCGTGGAGGGACTCATGACCACCGTCCATGCCATCACTGCCACCCAGAAGACTGTGGA
CGGCCCTTCTGGGAAGCTGTGGCGTGATGGCCGAGGGGCTGCCCAGAACATCATCCCTGATTCCACTGGTGCGGCCAAGG
CTGTAGGCAAGGTCATCCCTGAGCTGAACGGAAAGCTTACTGGCATGGCCTTCCGTGTCCCCACTCCCAACGTGTCCGTC
GTGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAATATGACGACATCAAGAAGGTGGTGAAGCAGGCATCAGAGGGCCC
CCTCAAGGGCATCCTGGGGTACACAGAGGACCAGGTTGTCTCCTGCGACTTTAACAGTGACCCTCACTCTTCCACCTTTG
ATGCCGGCGCTGGCATCGCTCTCAATGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTACAGCAAC
CGGGTGGTGGACCTCATGGTCCACATGGCCTCCAAGGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 within_species_paralog 5 retrogenes
Bos taurus ENSBTAG00000014731 possible_ortholog 4 retrogenes
Canis familiaris ENSCAFG00000015077 ortholog_one2many 4 retrogenes
Callithrix jacchus ENSCJAG00000008234 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000022051 ortholog_one2one 11 retrogenes
Erinaceus europaeus ENSEEUG00000011444 possible_ortholog 3 retrogenes
Echinops telfairi ENSETEG00000013749 possible_ortholog 118 retrogenes
retro_etel_1011, retro_etel_1037, retro_etel_1070, retro_etel_1117, retro_etel_1132, retro_etel_1153, retro_etel_1171, retro_etel_1183, retro_etel_1214, retro_etel_1215, retro_etel_1247, retro_etel_1249, retro_etel_1255, retro_etel_1257, retro_etel_1258, retro_etel_1266, retro_etel_127, retro_etel_1320, retro_etel_1349, retro_etel_1352, retro_etel_1381, retro_etel_1386, retro_etel_1389, retro_etel_1408, retro_etel_1419, retro_etel_1422, retro_etel_1431, retro_etel_1437, retro_etel_1470, retro_etel_1473, retro_etel_1490, retro_etel_150, retro_etel_1511, retro_etel_1538, retro_etel_1550, retro_etel_1563, retro_etel_1570, retro_etel_1588, retro_etel_1601, retro_etel_1608, retro_etel_1620, retro_etel_163, retro_etel_1635, retro_etel_1641, retro_etel_1674, retro_etel_1679, retro_etel_1702, retro_etel_1738, retro_etel_1746, retro_etel_1759, retro_etel_1769, retro_etel_1776, retro_etel_1780, retro_etel_180, retro_etel_184, retro_etel_1840, retro_etel_1869, retro_etel_1895, retro_etel_1897, retro_etel_1949, retro_etel_1970, retro_etel_1976, retro_etel_1982, retro_etel_1989, retro_etel_2033, retro_etel_2076, retro_etel_209, retro_etel_212, retro_etel_213, retro_etel_2152, retro_etel_2161, retro_etel_2173, retro_etel_2198, retro_etel_2202, retro_etel_2210, retro_etel_243, retro_etel_290, retro_etel_330, retro_etel_339, retro_etel_340, retro_etel_365, retro_etel_397, retro_etel_432, retro_etel_440, retro_etel_463, retro_etel_489, retro_etel_495, retro_etel_504, retro_etel_536, retro_etel_557, retro_etel_586, retro_etel_589, retro_etel_600, retro_etel_611, retro_etel_618, retro_etel_621, retro_etel_624, retro_etel_649, retro_etel_653, retro_etel_69, retro_etel_770, retro_etel_780, retro_etel_790, retro_etel_792, retro_etel_798, retro_etel_802, retro_etel_810, retro_etel_874, retro_etel_895, retro_etel_899, retro_etel_90, retro_etel_906, retro_etel_931, retro_etel_934, retro_etel_935, retro_etel_968, retro_etel_969, retro_etel_987,
Felis catus ENSFCAG00000006874 ortholog_one2one 17 retrogenes
Homo sapiens ENSG00000111640 possible_ortholog 42 retrogenes
Gorilla gorilla ENSGGOG00000009553 possible_ortholog 30 retrogenes
Loxodonta africana ENSLAFG00000002780 ortholog_one2many 3 retrogenes
Macropus eugenii ENSMEUG00000015273 possible_ortholog 67 retrogenes
Microcebus murinus ENSMICG00000006546 possible_ortholog 16 retrogenes
Myotis lucifugus ENSMLUG00000014320 ortholog_one2one 18 retrogenes
Macaca mulatta ENSMMUG00000018679 possible_ortholog 33 retrogenes
Monodelphis domestica ENSMODG00000018066 possible_ortholog 41 retrogenes
Mustela putorius furo ENSMPUG00000016891 ortholog_one2many 28 retrogenes
Mus musculus ENSMUSG00000057666 possible_ortholog 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Nomascus leucogenys ENSNLEG00000003825 possible_ortholog 44 retrogenes
Ornithorhynchus anatinus ENSOANG00000004492 ortholog_one2many 1 retrogene
Ochotona princeps ENSOPRG00000012514 ortholog_one2one 10 retrogenes
Procavia capensis ENSPCAG00000006928 ortholog_one2one 9 retrogenes
Pongo abelii ENSPPYG00000004189 possible_ortholog 38 retrogenes
Pan troglodytes ENSPTRG00000004577 possible_ortholog 43 retrogenes
Pteropus vampyrus ENSPVAG00000012570 ortholog_one2one 14 retrogenes
Rattus norvegicus ENSRNOG00000018630 possible_ortholog 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 possible_ortholog 4 retrogenes
Sus scrofa ENSSSCG00000000694 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007538 ortholog_one2one 9 retrogenes
Tursiops truncatus ENSTTRG00000016094 possible_ortholog 2 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_187 79.57 95.20
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2. retro_amel_268 76.47 50.75
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3. retro_amel_294 71.26 75.08
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4. retro_amel_387 74.11 100.00
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5. retro_amel_443 80.90 100.00
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6. retro_amel_471 76.80 57.66
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7. retro_amel_601 78.76 67.27
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8. retro_amel_605 79.04 86.79
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9. retro_amel_641 76.89 67.27
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10. retro_amel_738 91.89 99.70
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11. retro_amel_750 84.73 100.00
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12. retro_amel_762 78.17 58.86
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13. retro_amel_852 78.36 79.58
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14. retro_amel_899 72.12 66.67
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15. retro_amel_961 77.91 100.00
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16. retro_amel_992 72.43 63.06
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17. retro_amel_1050 73.23 57.96
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18. retro_amel_1082 74.29 73.27
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19. retro_amel_1134 73.39 97.30
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20. retro_amel_1174 77.51 61.56
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21. retro_amel_1229 78.86 51.95
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22. retro_amel_1235 77.60 94.29
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23. retro_amel_1253 99.59 72.67
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24. retro_amel_1308 73.73 65.17
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25. retro_amel_1538 71.87 97.90
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26. retro_amel_1550 71.36 61.56
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27. retro_amel_1598 67.96 54.05
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28. retro_amel_1605 76.79 100.00
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29. retro_amel_1614 66.67 63.96
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30. retro_amel_1658 72.40 57.36
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31. retro_amel_1776 81.28 55.56
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32. retro_amel_1801 74.15 70.57
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33. retro_amel_1802 70.37 80.78
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34. retro_amel_1900 70.04 67.87
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35. retro_amel_1904 82.39 100.00
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Download FASTA sequences of all ENSAMEG00000014329 retrocopies