Parental gene:

GAPDH, ENSMICG00000006546

Aliases:None
Description:glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4141]
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2169:398609..402500(+)


>ENSMICG00000006546
ATGGTGAAAGTGAAGGCCGGAATAAACGGCTTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCTTTATCTCTGGCAA
AGTGGATATTGTCGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACCCACG
GCAAGTTCCATGGCACAGTCAAGGCGGAGAATGGGAAGCTTGTCATCAATGGCCAGCCCATAACCATCTTCCAGGAGCGA
GATCCCACCAAAATCAAATGGGGTGAAGCGGGCGCTGATTACGTCGTGGAGTCCACTGGCGTCTTCACTACCCTGGAGAA
GGCTGGGGCTCACCTAGATGGGGGTGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGATGCCCCCATGTTTGTGATGG
GCGTGAACCACGACAAGTACCAAAACAACCTCACCATTATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCCCCCCTG
GCCAAGGTCATCCATGACAACTTTGGCATCGTGGAGGGTCTCATGACCACAGTCCATGCCGTCACCGCCACCCAGAAGAC
CGTGGATGGCCCCTCTGGGAAGATGTGGCGTGATGGCCGTGGGGCTCTCCAGAACATCATCCCTGCGTCCACTGGCGCAG
CCAAGGCTGTGGGCAAGGTCATCCCCGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGCGTGCCCACTGCCAACGTG
TCCGTGGTGGACCTGACCTGCCGTCTGGAGAAGCCGGCCAAGTATGATGACATCAAGAAGGTGGTGAAGCAGGCTGCGGA
TGGCCCTCTCAAGGGCATCCTGGGCTACACTGAGCACCAGGTAGTCTCCTCTGACTTCAACAGCGACACCCACTCTTCCA
CCTTTGATGCTGGGGCTGGCATCGCCCTCAACGACCACTTTGTAAAGCTCGTTGCCTGGTATGACAATGAATTTGGCTAC
AGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCACCAAGGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
Ailuropoda melanoleuca ENSAMEG00000014329 possible_ortholog 35 retrogenes
Canis familiaris ENSCAFG00000015077 possible_ortholog 4 retrogenes
Callithrix jacchus ENSCJAG00000008234 ortholog_one2many 1 retrogene
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Erinaceus europaeus ENSEEUG00000011444 ortholog_one2one 3 retrogenes
Homo sapiens ENSG00000111640 ortholog_one2one 42 retrogenes
Gorilla gorilla ENSGGOG00000009553 ortholog_one2many 30 retrogenes
Loxodonta africana ENSLAFG00000002780 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015273 ortholog_one2one 67 retrogenes
Macaca mulatta ENSMMUG00000018679 ortholog_one2many 33 retrogenes
Monodelphis domestica ENSMODG00000018066 ortholog_one2many 41 retrogenes
Mustela putorius furo ENSMPUG00000016891 possible_ortholog 28 retrogenes
Mus musculus ENSMUSG00000057666 possible_ortholog 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Nomascus leucogenys ENSNLEG00000003825 ortholog_one2one 44 retrogenes
Pongo abelii ENSPPYG00000004189 ortholog_one2one 38 retrogenes
Pan troglodytes ENSPTRG00000004577 ortholog_one2one 43 retrogenes
Rattus norvegicus ENSRNOG00000018630 possible_ortholog 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 ortholog_one2many 4 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmur_145 94.61 99.70
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2. retro_mmur_329 94.93 100.00
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3. retro_mmur_429 86.67 62.69
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4. retro_mmur_464 90.39 67.16
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5. retro_mmur_670 85.12 85.07
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6. retro_mmur_780 91.44 86.57
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7. retro_mmur_873 90.45 100.00
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8. retro_mmur_1049 92.13 79.70
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9. retro_mmur_1064 95.44 78.51
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10. retro_mmur_1084 89.94 100.00
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11. retro_mmur_1255 94.54 54.33
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12. retro_mmur_1431 92.16 75.82
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13. retro_mmur_1446 62.50 93.43
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14. retro_mmur_1463 97.01 100.00
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15. retro_mmur_1553 93.96 54.03
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16. retro_mmur_1567 95.25 87.76
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Download FASTA sequences of all ENSMICG00000006546 retrocopies