Parental gene:

GAPDH, ENSMODG00000018066

Aliases:None
Description:Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F7G487]
Organism:Opossum (Monodelphis domestica)
Coordinates:8:107920658..107922687(+)


>ENSMODG00000018066
TTTGGCCGTATTGGACGCCTGGTGACCAGGGCAGCATTCCACTCCGATAAAGTAGAAGTTGTGGCCATCAATGACCCCTT
CATTGACCTCGACTACATGGTTTACATGTTCCAGTATGATTCCACTCATGGCAAATTCAAGGGCACTGTAAAGGCAGAGA
ATGGAAAGCTGGTGATCAATGGAAAAGCCATTACCATCTCCCAGGAGCGGGATCCCGCCAACATTAAATGGGGAGATGCT
GGAGCCGAGTACGTTGTGGAGTCCACTGGCGTGTTTACCACCATGGAAAAGGCTGGGGCTCACTTGAAGGGTGGAGCCAA
GCGCGTCATTATCTCTGCCCCCTCTGCTGATGCCCCAATGTTCGTGATGGGGGTGAACCACGAGAAATACGATAACTCCC
TCAAGATCGTCAGTAATGCCTCCTGCACTACCAACTGCTTGGCCCCCCTGGCCAAAGTCATTCACGACAACTTCGGCATT
GTGGAAGGACTCATGACCACAGTCCATGCCATTACCGCTACCCAGAAGACAGTAGATGGCCCCTCTGGCAAGCTGTGGCG
TGATGGGCGTGGGGCTGCCCAAAATATCATCCCTGCTTCCACCGGTGCCGCCAAGGCTGTGGGCAAGGTCATACCCGAGC
TGAACGGGAAGCTCACAGGCATGGCCTTCCGTGTTCCCACTCCCAACGTGTCCGTGGTGGATCTGACTTGCCGCCTGGAG
AAAGCTGCCAAATACGATGACATCAAGAAGGTGGTGAAGCAAGCGTCAGAGGGAGCCTTAAAAGGCATCTTGGGCTACAC
AGAGGACCAGGTTGTATCCTGTGACTTTAACAGCGACACCCACTCTTCTACCTTCGATGCTGGCGCTGGCATTGCGCTCA
ACGACCATTTTGTCAAGCTCATTTCTTGGTATGACAATGAGTATGGTTACAGCCACCGCGTAGTAGACCTCATGGCGTAC
ATGGCCACCAAGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
Ailuropoda melanoleuca ENSAMEG00000014329 possible_ortholog 35 retrogenes
Bos taurus ENSBTAG00000014731 possible_ortholog 4 retrogenes
Canis familiaris ENSCAFG00000015077 possible_ortholog 4 retrogenes
Callithrix jacchus ENSCJAG00000008234 ortholog_many2many 1 retrogene
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000022051 possible_ortholog 11 retrogenes
Erinaceus europaeus ENSEEUG00000011444 ortholog_one2many 3 retrogenes
Echinops telfairi ENSETEG00000013749 possible_ortholog 118 retrogenes
retro_etel_1011, retro_etel_1037, retro_etel_1070, retro_etel_1117, retro_etel_1132, retro_etel_1153, retro_etel_1171, retro_etel_1183, retro_etel_1214, retro_etel_1215, retro_etel_1247, retro_etel_1249, retro_etel_1255, retro_etel_1257, retro_etel_1258, retro_etel_1266, retro_etel_127, retro_etel_1320, retro_etel_1349, retro_etel_1352, retro_etel_1381, retro_etel_1386, retro_etel_1389, retro_etel_1408, retro_etel_1419, retro_etel_1422, retro_etel_1431, retro_etel_1437, retro_etel_1470, retro_etel_1473, retro_etel_1490, retro_etel_150, retro_etel_1511, retro_etel_1538, retro_etel_1550, retro_etel_1563, retro_etel_1570, retro_etel_1588, retro_etel_1601, retro_etel_1608, retro_etel_1620, retro_etel_163, retro_etel_1635, retro_etel_1641, retro_etel_1674, retro_etel_1679, retro_etel_1702, retro_etel_1738, retro_etel_1746, retro_etel_1759, retro_etel_1769, retro_etel_1776, retro_etel_1780, retro_etel_180, retro_etel_184, retro_etel_1840, retro_etel_1869, retro_etel_1895, retro_etel_1897, retro_etel_1949, retro_etel_1970, retro_etel_1976, retro_etel_1982, retro_etel_1989, retro_etel_2033, retro_etel_2076, retro_etel_209, retro_etel_212, retro_etel_213, retro_etel_2152, retro_etel_2161, retro_etel_2173, retro_etel_2198, retro_etel_2202, retro_etel_2210, retro_etel_243, retro_etel_290, retro_etel_330, retro_etel_339, retro_etel_340, retro_etel_365, retro_etel_397, retro_etel_432, retro_etel_440, retro_etel_463, retro_etel_489, retro_etel_495, retro_etel_504, retro_etel_536, retro_etel_557, retro_etel_586, retro_etel_589, retro_etel_600, retro_etel_611, retro_etel_618, retro_etel_621, retro_etel_624, retro_etel_649, retro_etel_653, retro_etel_69, retro_etel_770, retro_etel_780, retro_etel_790, retro_etel_792, retro_etel_798, retro_etel_802, retro_etel_810, retro_etel_874, retro_etel_895, retro_etel_899, retro_etel_90, retro_etel_906, retro_etel_931, retro_etel_934, retro_etel_935, retro_etel_968, retro_etel_969, retro_etel_987,
Felis catus ENSFCAG00000006874 possible_ortholog 17 retrogenes
Homo sapiens ENSG00000111640 ortholog_one2many 42 retrogenes
Gorilla gorilla ENSGGOG00000009553 ortholog_many2many 30 retrogenes
Loxodonta africana ENSLAFG00000002780 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015273 ortholog_one2many 67 retrogenes
Microcebus murinus ENSMICG00000006546 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000014320 possible_ortholog 18 retrogenes
Macaca mulatta ENSMMUG00000018679 ortholog_many2many 33 retrogenes
Mustela putorius furo ENSMPUG00000016891 possible_ortholog 28 retrogenes
Mus musculus ENSMUSG00000057666 ortholog_many2many 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Nomascus leucogenys ENSNLEG00000003825 ortholog_one2many 44 retrogenes
Ornithorhynchus anatinus ENSOANG00000004492 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000012514 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000006928 possible_ortholog 9 retrogenes
Pongo abelii ENSPPYG00000004189 ortholog_one2many 38 retrogenes
Pan troglodytes ENSPTRG00000004577 ortholog_one2many 43 retrogenes
Pteropus vampyrus ENSPVAG00000012570 possible_ortholog 14 retrogenes
Rattus norvegicus ENSRNOG00000018630 ortholog_many2many 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 ortholog_many2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 ortholog_many2many 4 retrogenes
Sus scrofa ENSSSCG00000000694 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007538 possible_ortholog 9 retrogenes
Tursiops truncatus ENSTTRG00000016094 possible_ortholog 2 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_142 77.85 100.00
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2. retro_mdom_275 88.57 53.85
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3. retro_mdom_310 76.84 58.15
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4. retro_mdom_354 54.07 52.31
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5. retro_mdom_382 81.10 100.00
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6. retro_mdom_497 79.45 100.00
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7. retro_mdom_531 65.88 63.69
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8. retro_mdom_552 74.70 100.00
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9. retro_mdom_584 81.94 66.46
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10. retro_mdom_590 74.46 84.92
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11. retro_mdom_591 70.82 100.00
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12. retro_mdom_628 76.92 63.69
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13. retro_mdom_678 54.35 56.00
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14. retro_mdom_766 60.89 64.57
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15. retro_mdom_816 75.22 69.85
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16. retro_mdom_828 83.84 100.00
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17. retro_mdom_832 90.95 68.00
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18. retro_mdom_835 84.94 96.00
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19. retro_mdom_863 88.60 83.08
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20. retro_mdom_1060 87.10 76.31
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21. retro_mdom_1089 88.92 100.00
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22. retro_mdom_1104 69.57 56.62
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23. retro_mdom_1137 82.28 72.31
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24. retro_mdom_1161 80.92 100.00
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25. retro_mdom_1184 86.15 100.00
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26. retro_mdom_1233 83.08 60.00
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27. retro_mdom_1241 84.62 52.00
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28. retro_mdom_1317 76.06 65.23
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29. retro_mdom_1358 74.68 72.62
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30. retro_mdom_1384 53.77 59.69
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31. retro_mdom_1494 78.63 80.62
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32. retro_mdom_1544 71.03 88.31
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33. retro_mdom_1610 74.39 50.15
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34. retro_mdom_1631 60.34 52.92
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35. retro_mdom_1661 64.52 56.92
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36. retro_mdom_1691 78.60 65.85
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37. retro_mdom_1698 70.33 74.77
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38. retro_mdom_1743 73.45 68.00
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39. retro_mdom_1810 60.25 74.15
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40. retro_mdom_1908 56.85 75.69
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41. retro_mdom_2022 83.95 99.69
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Download FASTA sequences of all ENSMODG00000018066 retrocopies