Parental gene:

GAPDH, ENSGGOG00000009553

Aliases:None
Description:Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G3R288]
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:6725319..6729267(+)


>ENSGGOG00000009553
ATGGGGAAGGTGAAGGTCGGAGTCAACGGATTTGGTCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTTAACTCTGGTAA
AGTGGATATTGTTGCCATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTTCCAATATGATTCCACCCATG
GCAAATTCCATGGCACCGTCAAGGCTGAGAACGGGAAGCTTGTCATCAATGGAAATCCCATCACCATCTTCCAGGAGCGA
GATCCCTCCAAAATCAAGTGGGGCGATGCTGGTGCTGAGTACGTCGTGGAGTCCACTGGTGTCTTCACCACCATGGAGAA
GGCTGGGGCTCATTTGCAGGGGGGAGCCAAAAGGGTCATCATCTCTGCCCCCTCTGCTGACGCCCCCATGTTCGTCATGG
GTGTGAACCATGAGAAGTATGACAACAGCCTCAAGATCATCAGCAATGCCTCCTGCACCACCAACTGCTTAGCACCCCTG
GCCAAGGTCATCCATGACAACTTTGGTATCGTGGAAGGACTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGAC
TGTGGATGGCCCCTCCGGGAAACTGTGGCGTGATGGCCGCGGGGCTCTCCAGAACATCATCCCTGCCTCTACTGGCGCTG
CCAAGGCTGTGGGCAAGGTCATCCCTGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACTGCCAACGTG
TCAGTGGTGGACCTGACCTGCCGTCTAGAAAAACCTGCCAAATATGATGACATCAAGAAGGTGGTGAAGCAGGCGTCAGA
GGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGCACCAGGTGGTCTCCTCCGACTTCAACAGCGACACCCACTCCTCCA
CCTTCGACGCTGGGGCTGGCATTGCCCTCAACGACCACTTTGTCAAGCTCATTTCCTGGTATGACAACGAATTTGGCTAC
AGCAACAGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1456 .51 RPM
SRP007412_cerebellum 812 .75 RPM
SRP007412_heart 1471 .56 RPM
SRP007412_kidney 992 .82 RPM
SRP007412_liver 690 .15 RPM
SRP007412_testis 463 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
Ailuropoda melanoleuca ENSAMEG00000014329 possible_ortholog 35 retrogenes
Bos taurus ENSBTAG00000014731 possible_ortholog 4 retrogenes
Canis familiaris ENSCAFG00000015077 possible_ortholog 4 retrogenes
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000022051 possible_ortholog 11 retrogenes
Erinaceus europaeus ENSEEUG00000011444 ortholog_one2many 3 retrogenes
Echinops telfairi ENSETEG00000013749 possible_ortholog 118 retrogenes
retro_etel_1011, retro_etel_1037, retro_etel_1070, retro_etel_1117, retro_etel_1132, retro_etel_1153, retro_etel_1171, retro_etel_1183, retro_etel_1214, retro_etel_1215, retro_etel_1247, retro_etel_1249, retro_etel_1255, retro_etel_1257, retro_etel_1258, retro_etel_1266, retro_etel_127, retro_etel_1320, retro_etel_1349, retro_etel_1352, retro_etel_1381, retro_etel_1386, retro_etel_1389, retro_etel_1408, retro_etel_1419, retro_etel_1422, retro_etel_1431, retro_etel_1437, retro_etel_1470, retro_etel_1473, retro_etel_1490, retro_etel_150, retro_etel_1511, retro_etel_1538, retro_etel_1550, retro_etel_1563, retro_etel_1570, retro_etel_1588, retro_etel_1601, retro_etel_1608, retro_etel_1620, retro_etel_163, retro_etel_1635, retro_etel_1641, retro_etel_1674, retro_etel_1679, retro_etel_1702, retro_etel_1738, retro_etel_1746, retro_etel_1759, retro_etel_1769, retro_etel_1776, retro_etel_1780, retro_etel_180, retro_etel_184, retro_etel_1840, retro_etel_1869, retro_etel_1895, retro_etel_1897, retro_etel_1949, retro_etel_1970, retro_etel_1976, retro_etel_1982, retro_etel_1989, retro_etel_2033, retro_etel_2076, retro_etel_209, retro_etel_212, retro_etel_213, retro_etel_2152, retro_etel_2161, retro_etel_2173, retro_etel_2198, retro_etel_2202, retro_etel_2210, retro_etel_243, retro_etel_290, retro_etel_330, retro_etel_339, retro_etel_340, retro_etel_365, retro_etel_397, retro_etel_432, retro_etel_440, retro_etel_463, retro_etel_489, retro_etel_495, retro_etel_504, retro_etel_536, retro_etel_557, retro_etel_586, retro_etel_589, retro_etel_600, retro_etel_611, retro_etel_618, retro_etel_621, retro_etel_624, retro_etel_649, retro_etel_653, retro_etel_69, retro_etel_770, retro_etel_780, retro_etel_790, retro_etel_792, retro_etel_798, retro_etel_802, retro_etel_810, retro_etel_874, retro_etel_895, retro_etel_899, retro_etel_90, retro_etel_906, retro_etel_931, retro_etel_934, retro_etel_935, retro_etel_968, retro_etel_969, retro_etel_987,
Felis catus ENSFCAG00000006874 possible_ortholog 17 retrogenes
Homo sapiens ENSG00000111640 ortholog_one2one 42 retrogenes
Loxodonta africana ENSLAFG00000002780 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015273 ortholog_one2many 67 retrogenes
Microcebus murinus ENSMICG00000006546 ortholog_one2many 16 retrogenes
Myotis lucifugus ENSMLUG00000014320 possible_ortholog 18 retrogenes
Macaca mulatta ENSMMUG00000018679 ortholog_one2one 33 retrogenes
Monodelphis domestica ENSMODG00000018066 ortholog_many2many 41 retrogenes
Mustela putorius furo ENSMPUG00000016891 possible_ortholog 28 retrogenes
Mus musculus ENSMUSG00000057666 possible_ortholog 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Ornithorhynchus anatinus ENSOANG00000004492 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000012514 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000006928 possible_ortholog 9 retrogenes
Pongo abelii ENSPPYG00000004189 ortholog_one2one 38 retrogenes
Pan troglodytes ENSPTRG00000004577 ortholog_one2one 43 retrogenes
Pteropus vampyrus ENSPVAG00000012570 possible_ortholog 14 retrogenes
Rattus norvegicus ENSRNOG00000018630 possible_ortholog 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 ortholog_many2many 4 retrogenes
Sus scrofa ENSSSCG00000000694 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007538 possible_ortholog 9 retrogenes
Tursiops truncatus ENSTTRG00000016094 possible_ortholog 2 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_341 72.82 56.42
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ggor_376 70.36 99.10
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ggor_412 75.95 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ggor_424 82.20 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ggor_427 73.21 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_ggor_428 77.22 100.00
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_ggor_429 76.11 73.13
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_ggor_430 70.49 54.33
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_ggor_431 70.88 100.00
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_ggor_459 69.82 65.67
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_ggor_804 87.24 99.40
Please wait, loading
Please wait, loading
Please wait, loading
12. retro_ggor_921 83.88 100.00
Please wait, loading
Please wait, loading
Please wait, loading
13. retro_ggor_922 83.88 100.00
Please wait, loading
Please wait, loading
Please wait, loading
14. retro_ggor_926 52.51 63.88
Please wait, loading
Please wait, loading
Please wait, loading
15. retro_ggor_1142 77.37 72.24
Please wait, loading
Please wait, loading
Please wait, loading
16. retro_ggor_1143 69.35 99.40
Please wait, loading
Please wait, loading
Please wait, loading
17. retro_ggor_1260 88.76 79.10
Please wait, loading
Please wait, loading
Please wait, loading
18. retro_ggor_1450 83.04 99.40
Please wait, loading
Please wait, loading
Please wait, loading
19. retro_ggor_1621 73.97 93.73
Please wait, loading
Please wait, loading
Please wait, loading
20. retro_ggor_1659 70.24 85.07
Please wait, loading
Please wait, loading
Please wait, loading
21. retro_ggor_1889 69.96 82.99
Please wait, loading
Please wait, loading
Please wait, loading
22. retro_ggor_1902 60.38 93.13
Please wait, loading
Please wait, loading
Please wait, loading
23. retro_ggor_1982 96.35 65.37
Please wait, loading
Please wait, loading
Please wait, loading
24. retro_ggor_2126 65.59 55.22
Please wait, loading
Please wait, loading
Please wait, loading
25. retro_ggor_2224 82.01 99.40
Please wait, loading
Please wait, loading
Please wait, loading
26. retro_ggor_2443 89.58 100.00
Please wait, loading
Please wait, loading
Please wait, loading
27. retro_ggor_2477 82.74 100.00
Please wait, loading
Please wait, loading
Please wait, loading
28. retro_ggor_2500 81.25 100.00
Please wait, loading
Please wait, loading
Please wait, loading
29. retro_ggor_2991 92.56 100.00
Please wait, loading
Please wait, loading
Please wait, loading
30. retro_ggor_3004 90.34 51.94
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSGGOG00000009553 retrocopies