Parental gene:

TPM4, ENSPTRG00000010637

Aliases:None
Description:tropomyosin 4 [Source:HGNC Symbol;Acc:12013]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:19:16341131..16368642(+)


>ENSPTRG00000010637
ATGGCCGGCCTCAACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCGGAAGACCG
CGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGCGAGAAAGCTGAAGGTGATGTGGCCGCCCTCAACC
GACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCCCTGCAGAAGCTGGAGGAGGCA
GAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAGGATGAGGAGAAGATGGAGAT
TCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGAAGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGG
TCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAA
CTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGA
AGAAATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTGG
AAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAG
ACACTAAACGAACTTAACTGTATATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 31 .82 RPM
SRP007412_cerebellum 94 .89 RPM
SRP007412_heart 42 .12 RPM
SRP007412_kidney 39 .70 RPM
SRP007412_liver 22 .91 RPM
SRP007412_testis 32 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004553 ortholog_one2one 2 retrogenes
retro_btau_1604, retro_btau_1758,
Canis familiaris ENSCAFG00000015796 ortholog_one2one 1 retrogene
retro_cfam_2107,
Callithrix jacchus ENSCJAG00000014135 possible_ortholog 1 retrogene
retro_cjac_206,
Gorilla gorilla ENSGGOG00000014510 ortholog_one2one 4 retrogenes
retro_ggor_1836, retro_ggor_2665, retro_ggor_2801, retro_ggor_609,
Monodelphis domestica ENSMODG00000014882 ortholog_one2one 1 retrogene
retro_mdom_1354,
Mus musculus ENSMUSG00000031799 ortholog_one2one 1 retrogene
retro_mmus_1625,
Nomascus leucogenys ENSNLEG00000005413 ortholog_one2one 2 retrogenes
retro_nleu_1952, retro_nleu_469,
Pteropus vampyrus ENSPVAG00000009755 ortholog_one2one 2 retrogenes
retro_pvam_186, retro_pvam_187,
Ictidomys tridecemlineatus ENSSTOG00000024252 ortholog_one2one 1 retrogene
retro_itri_1858,
Tupaia belangeri ENSTBEG00000012927 ortholog_one2one 7 retrogenes
retro_tbel_1435, retro_tbel_2468, retro_tbel_3663, retro_tbel_3709, retro_tbel_3872, retro_tbel_4651, retro_tbel_482,
Tarsius syrichta ENSTSYG00000010642 ortholog_one2one 9 retrogenes
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642, retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704, retro_tsyr_742, retro_tsyr_749,
Tursiops truncatus ENSTTRG00000014542 ortholog_one2one 2 retrogenes
retro_ttru_504, retro_ttru_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_516 75.60 82.26
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2. retro_ptro_1002 71.73 76.21
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3. retro_ptro_1109 73.47 98.79
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4. retro_ptro_1341 66.67 99.19
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5. retro_ptro_1342 66.67 99.19
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6. retro_ptro_1750 73.44 97.18
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7. retro_ptro_1768 94.35 100.00
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8. retro_ptro_2648 58.13 99.19
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9. retro_ptro_2694 90.67 88.71
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10. retro_ptro_2830 97.58 100.00
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Download FASTA sequences of all ENSPTRG00000010637 retrocopies